RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 MBD5Q9P267 1494 aa5.29□□□□□ -1.56
USF3-204ENST00000496826 DUOX2Q9NRD8 1548 aa5.29□□□□□ -1.56
USF3-204ENST00000496826 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP5.29□□□□□ -1.56
USF3-204ENST00000496826 S100A11P31949 105 aa5.29□□□□□ -1.56
USF3-204ENST00000496826 PXNP49023 591 aaPredicted RBP5.29□□□□□ -1.56
USF3-204ENST00000496826 DHRS2Q13268 280 aa5.29□□□□□ -1.56
USF3-204ENST00000496826 SUMO4Q6EEV6 95 aa5.29□□□□□ -1.56
USF3-204ENST00000496826 UNC13CQ8NB66 2214 aa5.29□□□□□ -1.56
USF3-204ENST00000496826 SMIM13P0DJ93 91 aa5.29□□□□□ -1.56
USF3-204ENST00000496826 TDGF1P3P51864 188 aa5.29□□□□□ -1.56
USF3-204ENST00000496826 GPR18Q14330 331 aa5.29□□□□□ -1.56
USF3-204ENST00000496826 TM4SF20Q53R12 229 aa5.29□□□□□ -1.56
USF3-204ENST00000496826 NFAM1Q8NET5 270 aaPredicted RBP5.29□□□□□ -1.56
USF3-204ENST00000496826 PTX4Q96A99 478 aa5.29□□□□□ -1.56
USF3-204ENST00000496826 OXGR1Q96P68 337 aa5.29□□□□□ -1.56
USF3-204ENST00000496826 PELI2Q9HAT8 420 aa5.29□□□□□ -1.56
USF3-204ENST00000496826 SPHK2Q9NRA0 654 aa5.29□□□□□ -1.56
USF3-204ENST00000496826 RASL12Q9NYN1 266 aa5.29□□□□□ -1.56
USF3-204ENST00000496826 KCNK7Q9Y2U2 307 aa5.29□□□□□ -1.56
USF3-204ENST00000496826 TEX264Q9Y6I9 313 aa5.29□□□□□ -1.56
USF3-204ENST00000496826 ZNF541Q9H0D2 1346 aa5.29□□□□□ -1.56
USF3-204ENST00000496826 FAM72CH0Y354 149 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 THBS4P35443 961 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 FAM72DQ6L9T8 149 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 UNQ5815/PRO19632Q6UWF5 114 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 SYT9Q86SS6 491 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 CLEC4DQ8WXI8 215 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 HHIPL1Q96JK4 782 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 NPVFQ9HCQ7 196 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 VSIG4Q9Y279 399 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 NME4O00746 187 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 UCNP55089 124 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 SLC10A2Q12908 348 aaPredicted RBP5.28□□□□□ -1.56
USF3-204ENST00000496826 SIX1Q15475 284 aaPredicted RBP5.28□□□□□ -1.56
USF3-204ENST00000496826 CPZQ66K79 652 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 BIVMQ86UB2 503 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 DNASE2BQ8WZ79 361 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 OR8B4Q96RC9 309 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 CFHR5Q9BXR6 569 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 RPF2Q9H7B2 306 aaKnown RBP5.28□□□□□ -1.56
USF3-204ENST00000496826 SAP30LQ9HAJ7 183 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 IL20Q9NYY1 176 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 PHLDA3Q9Y5J5 127 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 TOPBP1Q92547 1522 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 TMEM30CPA0ZSE6 113 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 UBL3O95164 117 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 SEC13P55735 322 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 STARD6P59095 220 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 CLEC9AQ6UXN8 241 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 OR10G7Q8NGN6 311 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 ZDHHC19Q8WVZ1 309 aaPredicted RBP5.28□□□□□ -1.56
USF3-204ENST00000496826 POM121Q96HA1 1249 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 RSRP1Q9BUV0 290 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 C20orf24Q9BUV8 137 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 C1QTNF6Q9BXI9 259 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 Q9N2K0 584 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 ONECUT1Q9UBC0 465 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 PEF1Q9UBV8 284 aaKnown RBP5.28□□□□□ -1.56
USF3-204ENST00000496826 INSIG2Q9Y5U4 225 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 ABCA10Q8WWZ4 1543 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 HYAL3O43820 417 aaPredicted RBP5.28□□□□□ -1.56
USF3-204ENST00000496826 GNG7O60262 68 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 TOMM40O96008 361 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 FCGR2BP31994 310 aaPredicted RBP5.28□□□□□ -1.56
USF3-204ENST00000496826 ERVFRD-1P60508 538 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 PSG9Q00887 426 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 MS4A13Q5J8X5 152 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 DNLZQ5SXM8 178 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 PLBD1Q6P4A8 553 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 MRPL52Q86TS9 123 aaKnown RBP5.28□□□□□ -1.56
USF3-204ENST00000496826 CHD5Q8TDI0 1954 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 AHCTF1Q8WYP5 2266 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 GGTLC1Q9BX51 225 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 KCNE5Q9UJ90 142 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 CD3EP07766 207 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 CLDN15P56746 228 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 SNAI3Q3KNW1 292 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 OR10J3Q5JRS4 329 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 LRTM2Q8N967 370 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 ZNF511Q8NB15 262 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 PTPRMP28827 1452 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.28□□□□□ -1.56
USF3-204ENST00000496826 K7ESF4 209 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 ATP5LO75964 103 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 CD160O95971 181 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 HMGN2P05204 90 aaKnown RBP5.28□□□□□ -1.56
USF3-204ENST00000496826 IGFBP2P18065 325 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 FOXO4P98177 505 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 MEF2BQ02080 365 aaPredicted RBP5.28□□□□□ -1.56
USF3-204ENST00000496826 SLC23A3Q6PIS1 610 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 SLC25A28Q96A46 364 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 IFI27L2Q9H2X8 130 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 GLIPR2Q9H4G4 154 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 CLEC5AQ9NY25 188 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 PTRH2Q9Y3E5 179 aaKnown RBP5.28□□□□□ -1.56
USF3-204ENST00000496826 TMEM189A5PLL7 270 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 TMEM189-UBE2V1I3L0A0 370 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 COL8A1P27658 744 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 B2MP61769 119 aa5.28□□□□□ -1.56
USF3-204ENST00000496826 LGALSLQ3ZCW2 172 aaPredicted RBP5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms