RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 CDIPTO14735 213 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 CASQ2O14958 399 aaPredicted RBP6.77□□□□□ -1.33
USP40-216ENST00000485943 NDUFB3O43676 98 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 RP2O75695 350 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 INMTO95050 263 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 NXPH2O95156 264 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 PLATP00750 562 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 CST4P01036 141 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 TTRP02766 147 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 PRKACBP22694 351 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 GATA3P23771 443 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 CD80P33681 288 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 GATA4P43694 442 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 HAAOP46952 286 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 PITPNBP48739 271 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 POU3F4P49335 361 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 NPY4RP50391 375 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 ATP1B3P54709 279 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 DVL1P1P54792 670 aaPredicted RBP6.77□□□□□ -1.33
USP40-216ENST00000485943 OR12D2P58182 307 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 TAS2R43P59537 309 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 MPPED2Q15777 294 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 ZNF181Q2M3W8 571 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 CR1LQ2VPA4 569 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 SMIM21Q3B7S5 101 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 LRRC10Q5BKY1 277 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 CD276Q5ZPR3 534 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 HAGHLQ6PII5 290 aaPredicted RBP6.77□□□□□ -1.33
USP40-216ENST00000485943 IZUMO2Q6UXV1 221 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 RBMS3Q6XE24 437 aaKnown RBP6.77□□□□□ -1.33
USP40-216ENST00000485943 DCDC5Q6ZRR9 648 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 DNM1P46Q6ZS02 220 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 SSX6Q7RTT6 188 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 SATL1Q86VE3 508 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 SYS1Q8N2H4 156 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 RFLNBQ8N5W9 214 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 ZSCAN4Q8NAM6 433 aaPredicted RBP6.77□□□□□ -1.33
USP40-216ENST00000485943 BVESQ8NE79 360 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 OR5A2Q8NGI9 324 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 OR52I1Q8NGK6 324 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 PP6455Q8WZ26 134 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 ST8SIA4Q92187 359 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 H1FXQ92522 213 aaKnown RBP6.77□□□□□ -1.33
USP40-216ENST00000485943 RPL3LQ92901 407 aaKnown RBP6.77□□□□□ -1.33
USP40-216ENST00000485943 C10orf35Q96D05 121 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 CNBD2Q96M20 576 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 SOX7Q9BT81 388 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 FAM192AQ9GZU8 254 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 PATZ1Q9HBE1 687 aaKnown RBP6.77□□□□□ -1.33
USP40-216ENST00000485943 ERVK13-1Q9NX77 482 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 PRR13Q9NZ81 148 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 EXOGQ9Y2C4 368 aaKnown RBP6.77□□□□□ -1.33
USP40-216ENST00000485943 CAB39Q9Y376 341 aaPredicted RBP6.77□□□□□ -1.33
USP40-216ENST00000485943 U3KQE9 123 aa6.77□□□□□ -1.33
USP40-216ENST00000485943 CSMD1Q96PZ7 3565 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 PNMA8CA0A1B0GUJ8 204 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 A0A1W2PPH5 198 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 A0A1W2PQ09 198 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 DHRS7CA6NNS2 312 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 CEACAM18A8MTB9 384 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 TRAPPC2LH3BP13 241 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 LGALS8O00214 317 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 SLC1A7O00341 560 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 ATP6V1G2O95670 118 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 PNPP00491 289 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 IGHV2-5P01817 119 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 GYPAP02724 150 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 MUC1P15941 1255 aaPredicted RBP6.76□□□□□ -1.33
USP40-216ENST00000485943 NDUFB7P17568 137 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 CPT2P23786 658 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 VHLP40337 213 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 FUT6P51993 359 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 AQP4P55087 323 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 EFNB1P98172 346 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 ZNF85Q03923 595 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 ST3GAL4Q11206 333 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 ZNF154Q13106 437 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 MAB21L1Q13394 359 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 BLMHQ13867 455 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 ZMYND11Q15326 602 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 CDONQ4KMG0 1287 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 WDR38Q5JTN6 314 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 ZNF826PQ6ZT77 177 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 LHFPL2Q6ZUX7 228 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 LRRC28Q86X40 367 aaPredicted RBP6.76□□□□□ -1.33
USP40-216ENST00000485943 CATSPERDQ86XM0 798 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 MKXQ8IYA7 352 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 CMTM4Q8IZR5 234 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 BPIFB2Q8N4F0 458 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 PNLDC1Q8NA58 520 aaKnown RBP6.76□□□□□ -1.33
USP40-216ENST00000485943 C19orf18Q8NEA5 215 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 OR5D14Q8NGL3 314 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 OR2G2Q8NGZ5 317 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 NANPQ8TBE9 248 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 OR5P3Q8WZ94 311 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 THRSPQ92748 146 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 RORBQ92753 470 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 FGGYQ96C11 551 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 MND1Q9BWT6 205 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 GFOD1Q9NXC2 390 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms