RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 SCGB3A2Q96PL1 93 aa0.87□□□□□ -2.27
VPS50-216ENST00000484954 CALN1Q9BXU9 219 aa0.87□□□□□ -2.27
VPS50-216ENST00000484954 DEFB129Q9H1M3 183 aa0.87□□□□□ -2.27
VPS50-216ENST00000484954 OR51B5Q9H339 312 aa0.87□□□□□ -2.27
VPS50-216ENST00000484954 CYP3A43Q9HB55 503 aa0.87□□□□□ -2.27
VPS50-216ENST00000484954 FBXO8Q9NRD0 319 aa0.87□□□□□ -2.27
VPS50-216ENST00000484954 TREX1Q9NSU2 369 aa0.87□□□□□ -2.27
VPS50-216ENST00000484954 VAX2Q9UIW0 290 aa0.87□□□□□ -2.27
VPS50-216ENST00000484954 DYSFO75923 2080 aa0.87□□□□□ -2.27
VPS50-216ENST00000484954 WDR19Q8NEZ3 1342 aa0.87□□□□□ -2.27
VPS50-216ENST00000484954 ICE1Q9Y2F5 2266 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 A0A1B0GTQ1 180 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 A8MWL6 223 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 H0YIV9 168 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 CASQ2O14958 399 aaPredicted RBP0.86□□□□□ -2.27
VPS50-216ENST00000484954 PSPHP1O15172 72 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 XRCC2O43543 280 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 SYNGR2O43760 224 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 ARL14EPLP0DKL9 152 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 GFAPP14136 432 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 GABRR2P28476 465 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 CLDN6P56747 220 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 RAB11AP62491 216 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 INCA1Q0VD86 236 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 RAB11BQ15907 218 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 C5orf64Q2M2E5 130 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 ZNF181Q2M3W8 571 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 ZNF678Q5SXM1 525 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 PIP5KL1Q5T9C9 394 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 LIN9Q5TKA1 542 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 KRTAP5-10Q6L8G5 202 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 CD300LGQ6UXG3 332 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 ASCL4Q6XD76 172 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 Q6ZSR6 202 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 PAGE2Q7Z2X7 111 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 DAW1Q8N136 415 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 ZCCHC24Q8N2G6 241 aaKnown RBP0.86□□□□□ -2.27
VPS50-216ENST00000484954 KIF2BQ8N4N8 673 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 ITFG1Q8TB96 612 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 CA5BP1Q8WTZ4 195 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 TNFRSF14Q92956 283 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 ISG20Q96AZ6 181 aaKnown RBP0.86□□□□□ -2.27
VPS50-216ENST00000484954 GPR21Q99679 349 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 PDCD1LG2Q9BQ51 273 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 EMC6Q9BV81 110 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 NAA50Q9GZZ1 169 aaKnown RBP0.86□□□□□ -2.27
VPS50-216ENST00000484954 REEP1Q9H902 201 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 PXMP2Q9NR77 195 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 MCUBQ9NWR8 336 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 ZMAT5Q9UDW3 170 aaKnown RBP0.86□□□□□ -2.27
VPS50-216ENST00000484954 KLF12Q9Y4X4 402 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 TTC41PQ6P2S7 1318 aa0.86□□□□□ -2.27
VPS50-216ENST00000484954 ISPDA4D126 451 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 H3BN98 237 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 TRDMT1O14717 391 aaKnown RBP0.85□□□□□ -2.27
VPS50-216ENST00000484954 CASC3O15234 703 aaKnown RBP0.85□□□□□ -2.27
VPS50-216ENST00000484954 FARS2O95363 451 aaKnown RBP0.85□□□□□ -2.27
VPS50-216ENST00000484954 GCGP01275 180 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 IGHG2P01859 326 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 MAS1P04201 325 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 STAG3L3P0CL85 134 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 MYL9P24844 172 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 IL3RAP26951 378 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 MPIP34949 423 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 MAGEA1P43355 309 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 GPR1P46091 355 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 LCN2P80188 198 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 DEFB103AP81534 67 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 KDSRQ06136 332 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 DNAJC3Q13217 504 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 TFDP2Q14188 446 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 KRTAP21-3Q3LHN1 58 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 FAM104BQ5XKR9 115 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 PLCXD3Q63HM9 321 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 RWDD4Q6NW29 188 aaKnown RBP0.85□□□□□ -2.27
VPS50-216ENST00000484954 ULK3Q6PHR2 472 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 TMPRSS11AQ6ZMR5 421 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 NDUFAF7Q7L592 441 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 SLC30A8Q8IWU4 369 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 BBS7Q8IWZ6 715 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 MICU2Q8IYU8 434 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 ORMDL3Q8N138 153 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 LINC00337Q8N6G1 96 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 WDR31Q8NA23 367 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 ZFP62Q8NB50 900 aaPredicted RBP0.85□□□□□ -2.27
VPS50-216ENST00000484954 UBAC2Q8NBM4 344 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 INO80EQ8NBZ0 244 aaPredicted RBP0.85□□□□□ -2.27
VPS50-216ENST00000484954 OR2M7Q8NG81 312 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 DCAKDQ8WVC6 231 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 ASZ1Q8WWH4 475 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 BAALCQ8WXS3 180 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 TMEM234Q8WY98 164 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 OR8D1Q8WZ84 308 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 PEX13Q92968 403 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 RBPMSQ93062 196 aaKnown RBP0.85□□□□□ -2.27
VPS50-216ENST00000484954 TOP1MTQ969P6 601 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 ISOC2Q96AB3 205 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 CERS2Q96G23 380 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 RDH12Q96NR8 316 aa0.85□□□□□ -2.27
VPS50-216ENST00000484954 SFXN3Q9BWM7 321 aa0.85□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms