RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 UBALD2Q8IYN6 164 aa3.2□□□□□ -1.9
UPF3B-203ENST00000478840 GAPTQ8N292 157 aa3.2□□□□□ -1.9
UPF3B-203ENST00000478840 OR51Q1Q8NH59 317 aa3.2□□□□□ -1.9
UPF3B-203ENST00000478840 CIRBP-AS1Q8TBR5 109 aa3.2□□□□□ -1.9
UPF3B-203ENST00000478840 SERPINB11Q96P15 392 aa3.2□□□□□ -1.9
UPF3B-203ENST00000478840 ALS2CR12Q96Q35 445 aa3.2□□□□□ -1.9
UPF3B-203ENST00000478840 VAT1Q99536 393 aa3.2□□□□□ -1.9
UPF3B-203ENST00000478840 TMED9Q9BVK6 235 aa3.2□□□□□ -1.9
UPF3B-203ENST00000478840 ZNF430Q9H8G1 570 aaPredicted RBP3.2□□□□□ -1.9
UPF3B-203ENST00000478840 WFDC1Q9HC57 220 aa3.2□□□□□ -1.9
UPF3B-203ENST00000478840 C2orf16Q68DN1 1984 aa3.2□□□□□ -1.9
UPF3B-203ENST00000478840 NPHP4O75161 1426 aaPredicted RBP3.19□□□□□ -1.9
UPF3B-203ENST00000478840 IGLV3-16A0A075B6K0 115 aa3.19□□□□□ -1.9
UPF3B-203ENST00000478840 ZNF233A6NK53 670 aa3.19□□□□□ -1.9
UPF3B-203ENST00000478840 CETN3O15182 167 aa3.19□□□□□ -1.9
UPF3B-203ENST00000478840 RBFOX2O43251 390 aaKnown RBP eCLIP3.19□□□□□ -1.9
UPF3B-203ENST00000478840 NDUFS5O43920 106 aa3.19□□□□□ -1.9
UPF3B-203ENST00000478840 SCN2BO60939 215 aa3.19□□□□□ -1.9
UPF3B-203ENST00000478840 IGLV3-25P01717 112 aa3.19□□□□□ -1.9
UPF3B-203ENST00000478840 PRSS3P35030 304 aa3.19□□□□□ -1.9
UPF3B-203ENST00000478840 IL5RAQ01344 420 aa3.19□□□□□ -1.9
UPF3B-203ENST00000478840 TEX30Q5JUR7 227 aa3.19□□□□□ -1.9
UPF3B-203ENST00000478840 ZNF684Q5T5D7 378 aa3.19□□□□□ -1.9
UPF3B-203ENST00000478840 IDNKQ5T6J7 187 aa3.19□□□□□ -1.9
UPF3B-203ENST00000478840 NANOGP8Q6NSW7 305 aa3.19□□□□□ -1.9
UPF3B-203ENST00000478840 Q6ZSR6 202 aa3.19□□□□□ -1.9
UPF3B-203ENST00000478840 ENTHD1Q8IYW4 607 aa3.19□□□□□ -1.9
UPF3B-203ENST00000478840 TMEM256Q8N2U0 113 aa3.19□□□□□ -1.9
UPF3B-203ENST00000478840 SPICQ8N5J4 248 aa3.19□□□□□ -1.9
UPF3B-203ENST00000478840 ATPAF2Q8N5M1 289 aa3.19□□□□□ -1.9
UPF3B-203ENST00000478840 ZNF645Q8N7E2 425 aa3.19□□□□□ -1.9
UPF3B-203ENST00000478840 TTLQ8NG68 377 aa3.19□□□□□ -1.9
UPF3B-203ENST00000478840 S100PBPQ96BU1 408 aa3.19□□□□□ -1.9
UPF3B-203ENST00000478840 RILPQ96NA2 401 aa3.19□□□□□ -1.9
UPF3B-203ENST00000478840 ZFP3Q96NJ6 502 aa3.19□□□□□ -1.9
UPF3B-203ENST00000478840 TRNT1Q96Q11 434 aaKnown RBP3.19□□□□□ -1.9
UPF3B-203ENST00000478840 CYTH2Q99418 400 aa3.19□□□□□ -1.9
UPF3B-203ENST00000478840 SHCBP1LQ9BZQ2 653 aa3.19□□□□□ -1.9
UPF3B-203ENST00000478840 SLC38A1Q9H2H9 487 aa3.19□□□□□ -1.9
UPF3B-203ENST00000478840 METTL8Q9H825 291 aaKnown RBP3.19□□□□□ -1.9
UPF3B-203ENST00000478840 C12orf4Q9NQ89 552 aa3.19□□□□□ -1.9
UPF3B-203ENST00000478840 ANXA10Q9UJ72 324 aa3.19□□□□□ -1.9
UPF3B-203ENST00000478840 ENPP5Q9UJA9 477 aa3.19□□□□□ -1.9
UPF3B-203ENST00000478840 YTHDF2Q9Y5A9 579 aaKnown RBP3.19□□□□□ -1.9
UPF3B-203ENST00000478840 ADAMTSL3P82987 1691 aa3.19□□□□□ -1.9
UPF3B-203ENST00000478840 TCAPO15273 167 aa3.18□□□□□ -1.9
UPF3B-203ENST00000478840 GATBO75879 557 aaKnown RBP3.18□□□□□ -1.9
UPF3B-203ENST00000478840 VAMP5O95183 116 aa3.18□□□□□ -1.9
UPF3B-203ENST00000478840 SLC35E2BP0CK96 405 aa3.18□□□□□ -1.9
UPF3B-203ENST00000478840 HSPD1P10809 573 aaKnown RBP3.18□□□□□ -1.9
UPF3B-203ENST00000478840 ME2P23368 584 aa3.18□□□□□ -1.9
UPF3B-203ENST00000478840 STX4Q12846 297 aa3.18□□□□□ -1.9
UPF3B-203ENST00000478840 SLAMF1Q13291 335 aa3.18□□□□□ -1.9
UPF3B-203ENST00000478840 OR4D1Q15615 310 aa3.18□□□□□ -1.9
UPF3B-203ENST00000478840 CEACAM16Q2WEN9 425 aa3.18□□□□□ -1.9
UPF3B-203ENST00000478840 YIF1BQ5BJH7 314 aa3.18□□□□□ -1.9
UPF3B-203ENST00000478840 ERICH5Q6P6B1 374 aa3.18□□□□□ -1.9
UPF3B-203ENST00000478840 ERO1BQ86YB8 467 aa3.18□□□□□ -1.9
UPF3B-203ENST00000478840 SELENOHQ8IZQ5 122 aaKnown RBP3.18□□□□□ -1.9
UPF3B-203ENST00000478840 SLC34A3Q8N130 599 aa3.18□□□□□ -1.9
UPF3B-203ENST00000478840 LRRC52Q8N7C0 313 aa3.18□□□□□ -1.9
UPF3B-203ENST00000478840 CLHC1Q8NHS4 586 aa3.18□□□□□ -1.9
UPF3B-203ENST00000478840 LINC01560Q8TB33 94 aa3.18□□□□□ -1.9
UPF3B-203ENST00000478840 PDCD6IPQ8WUM4 868 aaKnown RBP3.18□□□□□ -1.9
UPF3B-203ENST00000478840 RORBQ92753 470 aa3.18□□□□□ -1.9
UPF3B-203ENST00000478840 GTF2H4Q92759 462 aa3.18□□□□□ -1.9
UPF3B-203ENST00000478840 TMEM159Q96B96 161 aa3.18□□□□□ -1.9
UPF3B-203ENST00000478840 NEURL3Q96EH8 262 aa3.18□□□□□ -1.9
UPF3B-203ENST00000478840 CHCHD7Q9BUK0 85 aa3.18□□□□□ -1.9
UPF3B-203ENST00000478840 VCXQ9H320 206 aa3.18□□□□□ -1.9
UPF3B-203ENST00000478840 TMBIM4Q9HC24 238 aa3.18□□□□□ -1.9
UPF3B-203ENST00000478840 LRRC42Q9Y546 428 aa3.18□□□□□ -1.9
UPF3B-203ENST00000478840 ORC6Q9Y5N6 252 aa3.18□□□□□ -1.9
UPF3B-203ENST00000478840 TSPOAP1O95153 1857 aa3.18□□□□□ -1.9
UPF3B-203ENST00000478840 IGKV6-21A0A0C4DH24 114 aa3.17□□□□□ -1.9
UPF3B-203ENST00000478840 UPK1AO00322 258 aa3.17□□□□□ -1.9
UPF3B-203ENST00000478840 CDIPTO14735 213 aa3.17□□□□□ -1.9
UPF3B-203ENST00000478840 SGCEO43556 437 aa3.17□□□□□ -1.9
UPF3B-203ENST00000478840 PLIN3O60664 434 aa3.17□□□□□ -1.9
UPF3B-203ENST00000478840 MED6O75586 246 aa3.17□□□□□ -1.9
UPF3B-203ENST00000478840 YEATS4O95619 227 aa3.17□□□□□ -1.9
UPF3B-203ENST00000478840 CCNE2O96020 404 aa3.17□□□□□ -1.9
UPF3B-203ENST00000478840 IL3RAP26951 378 aa3.17□□□□□ -1.9
UPF3B-203ENST00000478840 PSMB2P49721 201 aa3.17□□□□□ -1.9
UPF3B-203ENST00000478840 LAMTOR4Q0VGL1 99 aa3.17□□□□□ -1.9
UPF3B-203ENST00000478840 AP1ARQ63HQ0 302 aa3.17□□□□□ -1.9
UPF3B-203ENST00000478840 AHSA2Q719I0 299 aa3.17□□□□□ -1.9
UPF3B-203ENST00000478840 BBS7Q8IWZ6 715 aa3.17□□□□□ -1.9
UPF3B-203ENST00000478840 OR4M2Q8NGB6 313 aa3.17□□□□□ -1.9
UPF3B-203ENST00000478840 OR2L8Q8NGY9 312 aa3.17□□□□□ -1.9
UPF3B-203ENST00000478840 SLC25A46Q96AG3 418 aa3.17□□□□□ -1.9
UPF3B-203ENST00000478840 ZNF396Q96N95 335 aaPredicted RBP3.17□□□□□ -1.9
UPF3B-203ENST00000478840 ZNF649Q9BS31 505 aa3.17□□□□□ -1.9
UPF3B-203ENST00000478840 NUDT9Q9BW91 350 aa3.17□□□□□ -1.9
UPF3B-203ENST00000478840 BEX2Q9BXY8 128 aa3.17□□□□□ -1.9
UPF3B-203ENST00000478840 NLE1Q9NVX2 485 aaPredicted RBP3.17□□□□□ -1.9
UPF3B-203ENST00000478840 MS4A12Q9NXJ0 267 aa3.17□□□□□ -1.9
UPF3B-203ENST00000478840 RFNGQ9Y644 331 aa3.17□□□□□ -1.9
UPF3B-203ENST00000478840 USH1CQ9Y6N9 552 aa3.17□□□□□ -1.9
UPF3B-203ENST00000478840 IGHV3-49A0A0A0MS15 119 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms