RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 RAB33BQ9H082 229 aa4.42□□□□□ -1.7
CCDC39-204ENST00000476379 TLNRD1Q9H1K6 362 aa4.42□□□□□ -1.7
CCDC39-204ENST00000476379 OR10A2Q9H208 303 aa4.42□□□□□ -1.7
CCDC39-204ENST00000476379 OBP2AQ9NY56 170 aa4.42□□□□□ -1.7
CCDC39-204ENST00000476379 GTF3C1Q12789 2109 aa4.42□□□□□ -1.7
CCDC39-204ENST00000476379 NAV2Q8IVL1 2488 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 ZNF727A8MUV8 499 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 ABCD4O14678 606 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 SPINK4O60575 86 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 UPK3AO75631 287 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 CNR1P21554 472 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 PTAFRP25105 342 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 PSMA3P25788 255 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 CD27P26842 260 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 GPR3P46089 330 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 C21orf58P58505 322 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 CCL7P80098 99 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 HOXA4Q00056 320 aaPredicted RBP4.41□□□□□ -1.7
CCDC39-204ENST00000476379 RUNX1Q01196 453 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 PMP22Q01453 160 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 PLAURQ03405 335 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 GNMTQ14749 295 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 PCK2Q16822 640 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 MICBQ29980 383 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 ZNF774Q6NX45 483 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 C19orf48Q6RUI8 117 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 RBMS3Q6XE24 437 aaKnown RBP4.41□□□□□ -1.7
CCDC39-204ENST00000476379 HIST2H3AQ71DI3 136 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 PUSL1Q8N0Z8 303 aaKnown RBP4.41□□□□□ -1.7
CCDC39-204ENST00000476379 FBXL14Q8N1E6 418 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 SVBPQ8N300 66 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 SLC22A24Q8N4F4 322 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 RFESDQ8TAC1 157 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 CA5BP1Q8WTZ4 195 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 ZNF837Q96EG3 531 aaPredicted RBP4.41□□□□□ -1.7
CCDC39-204ENST00000476379 THOC3Q96J01 351 aaKnown RBP4.41□□□□□ -1.7
CCDC39-204ENST00000476379 TMEM204Q9BSN7 226 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 NELFAQ9H3P2 528 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 OCIAD1Q9NX40 245 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 HSF4Q9ULV5 492 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 PPP1R3CQ9UQK1 317 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 MEMO1Q9Y316 297 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 C2CD3Q4AC94 2353 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 A0A1W2PPH5 198 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 TLCD2A6NGC4 264 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 DEFB108AA8MXU0 73 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 C9J4A7 227 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 CDC14BO60729 498 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 TUSC2O75896 110 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 PMS2P2O95744 297 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 GRPP07492 148 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 VSIG8P0DPA2 414 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 PPICP45877 212 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 RAB5BP61020 215 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 MIDNQ504T8 468 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 WIPI1Q5MNZ9 446 aaPredicted RBP4.41□□□□□ -1.7
CCDC39-204ENST00000476379 LINC01590Q5TEZ4 76 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 CD200R1LQ6Q8B3 271 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 SLC16A14Q7RTX9 510 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 GRINAQ7Z429 371 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 ATG4DQ86TL0 474 aaPredicted RBP4.41□□□□□ -1.7
CCDC39-204ENST00000476379 BAP18Q8IXM2 172 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 UBALD2Q8IYN6 164 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 CNEP1R1Q8N9A8 125 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 SLC38A9Q8NBW4 561 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 OR1S1Q8NH92 325 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 SLC46A1Q96NT5 459 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 ZNF385AQ96PM9 386 aaKnown RBP4.41□□□□□ -1.7
CCDC39-204ENST00000476379 RHOFQ9HBH0 211 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 CRLF2Q9HC73 371 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 CSMD1Q96PZ7 3565 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 TRAV1-2A0A0B4J238 106 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 LOC105371267A0A1B0GV96 52 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 C9orf170A2RU37 121 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 FAM24AA6NFZ4 105 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 KRBOX1C9JBD0 128 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 ZNF217O75362 1048 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 SFTA3P0C7M3 94 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 NAT2P11245 290 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 GALNSP34059 522 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 HSD17B7P56937 341 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 RAB11AP62491 216 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 EDDM3AQ14507 147 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 ACTBL2Q562R1 376 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 ZNF468Q5VIY5 522 aaPredicted RBP4.41□□□□□ -1.7
CCDC39-204ENST00000476379 TMEM268Q5VZI3 342 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 OR13C8Q8NGS7 320 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 CCNL2Q96S94 520 aaPredicted RBP4.41□□□□□ -1.7
CCDC39-204ENST00000476379 PFDN5Q99471 154 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 RYDENQ9NUL5 291 aaKnown RBP4.41□□□□□ -1.7
CCDC39-204ENST00000476379 LRFN1Q9P244 771 aa4.41□□□□□ -1.7
CCDC39-204ENST00000476379 C7orf66A4D0T2 115 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 ZIC3O60481 467 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 PIAS2O75928 621 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 OPN1MWP04001 364 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 OPN1MW2P0DN77 364 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 OPN1MW3P0DN78 364 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 OR5H8P0DN80 308 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 MMP9P14780 707 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 MST1P26927 711 aa4.4□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms