RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 GDF1P27539 372 aa16.64■□□□□ 0.25
VIM-203ENST00000469543 AGTR1P30556 359 aa16.64■□□□□ 0.25
VIM-203ENST00000469543 PSG4Q00888 419 aa16.64■□□□□ 0.25
VIM-203ENST00000469543 SRSF4Q08170 494 aaKnown RBP16.64■□□□□ 0.25
VIM-203ENST00000469543 CDCP2Q5VXM1 449 aa16.64■□□□□ 0.25
VIM-203ENST00000469543 FOXL2NBQ6ZUU3 175 aa16.64■□□□□ 0.25
VIM-203ENST00000469543 AAED1Q7RTV5 226 aa16.64■□□□□ 0.25
VIM-203ENST00000469543 TMEM200AQ86VY9 491 aa16.64■□□□□ 0.25
VIM-203ENST00000469543 FOXRED2Q8IWF2 684 aa16.64■□□□□ 0.25
VIM-203ENST00000469543 THAP6Q8TBB0 222 aa16.64■□□□□ 0.25
VIM-203ENST00000469543 SGCZQ96LD1 299 aa16.64■□□□□ 0.25
VIM-203ENST00000469543 CHMP1AQ9HD42 196 aaPredicted RBP16.64■□□□□ 0.25
VIM-203ENST00000469543 PLEKHJ1Q9NW61 149 aa16.64■□□□□ 0.25
VIM-203ENST00000469543 GLI4P10075 376 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 CCL2P13500 99 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 NAT1P18440 290 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 CRYGSP22914 178 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 NUP62P37198 522 aaPredicted RBP16.63■□□□□ 0.25
VIM-203ENST00000469543 MRPS34P82930 218 aaKnown RBP16.63■□□□□ 0.25
VIM-203ENST00000469543 ZXDAP98168 799 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 PEAR1Q5VY43 1037 aaPredicted RBP16.63■□□□□ 0.25
VIM-203ENST00000469543 SPTSSAQ969W0 71 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 LIME1Q9H400 295 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 PFDN2Q9UHV9 154 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 A0A1W2PNU3 283 aaPredicted RBP16.63■□□□□ 0.25
VIM-203ENST00000469543 MSGN1A6NI15 193 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 F5H0A9 414 aaPredicted RBP16.63■□□□□ 0.25
VIM-203ENST00000469543 YKT6O15498 198 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 CRHP06850 196 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 HLA-GP17693 338 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 THBS4P35443 961 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 ZNF133P52736 654 aaPredicted RBP16.63■□□□□ 0.25
VIM-203ENST00000469543 VAX1Q5SQQ9 334 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 DRAM2Q6UX65 266 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 ACOT7LQ6ZUV0 252 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 BVESQ8NE79 360 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 SEMA6DQ8NFY4 1073 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 NUDT16L1Q9BRJ7 211 aaKnown RBP16.63■□□□□ 0.25
VIM-203ENST00000469543 ARRDC1-AS1Q9H2J1 176 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 GSKIPQ9P0R6 139 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 A0A0D9SG52 128 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 A8MXK9 166 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 CYC1P08574 325 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 HOXB5P09067 269 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 PSMB6P28072 239 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 SRD5A2P31213 254 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 HOXD11P31277 338 aaPredicted RBP16.63■□□□□ 0.25
VIM-203ENST00000469543 LPCAT3Q6P1A2 487 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 SKA3Q8IX90 412 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 DCUN1D4Q92564 292 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 TMEM38BQ9NVV0 291 aa16.63■□□□□ 0.25
VIM-203ENST00000469543 ZNF587BE7ETH6 402 aa16.62■□□□□ 0.25
VIM-203ENST00000469543 HTR5AP47898 357 aa16.62■□□□□ 0.25
VIM-203ENST00000469543 AKR1C2P52895 323 aa16.62■□□□□ 0.25
VIM-203ENST00000469543 AKR1C1Q04828 323 aa16.62■□□□□ 0.25
VIM-203ENST00000469543 PIGYQ3MUY2 71 aa16.62■□□□□ 0.25
VIM-203ENST00000469543 OR51F2Q8NH61 342 aa16.62■□□□□ 0.25
VIM-203ENST00000469543 OR1F12Q8NHA8 337 aa16.62■□□□□ 0.25
VIM-203ENST00000469543 PP6455Q8WZ26 134 aa16.62■□□□□ 0.25
VIM-203ENST00000469543 OR5AC2Q9NZP5 309 aa16.62■□□□□ 0.25
VIM-203ENST00000469543 NUP50Q9UKX7 468 aa16.62■□□□□ 0.25
VIM-203ENST00000469543 ANAPC10Q9UM13 185 aa16.62■□□□□ 0.25
VIM-203ENST00000469543 TUBAL3A6NHL2 446 aa16.62■□□□□ 0.25
VIM-203ENST00000469543 HOXD4P09016 255 aaPredicted RBP16.62■□□□□ 0.25
VIM-203ENST00000469543 FGF2P09038 288 aa16.62■□□□□ 0.25
VIM-203ENST00000469543 SLC25A4P12235 298 aa16.62■□□□□ 0.25
VIM-203ENST00000469543 CYB561P49447 251 aa16.62■□□□□ 0.25
VIM-203ENST00000469543 FOXG1P55316 489 aaPredicted RBP16.62■□□□□ 0.25
VIM-203ENST00000469543 CHRFAM7AQ494W8 412 aa16.62■□□□□ 0.25
VIM-203ENST00000469543 ATRAIDQ6UW56 229 aa16.62■□□□□ 0.25
VIM-203ENST00000469543 RAB11FIP2Q7L804 512 aa16.62■□□□□ 0.25
VIM-203ENST00000469543 OVCH2Q7RTZ1 564 aa16.62■□□□□ 0.25
VIM-203ENST00000469543 C5orf24Q7Z6I8 188 aa16.62■□□□□ 0.25
VIM-203ENST00000469543 ARRDC1Q8N5I2 433 aa16.62■□□□□ 0.25
VIM-203ENST00000469543 ZSCAN4Q8NAM6 433 aaPredicted RBP16.62■□□□□ 0.25
VIM-203ENST00000469543 INO80EQ8NBZ0 244 aaPredicted RBP16.62■□□□□ 0.25
VIM-203ENST00000469543 THOC3Q96J01 351 aaKnown RBP16.62■□□□□ 0.25
VIM-203ENST00000469543 SIGLEC12Q96PQ1 595 aa16.62■□□□□ 0.25
VIM-203ENST00000469543 FOXJ2Q9P0K8 574 aa16.62■□□□□ 0.25
VIM-203ENST00000469543 A0A096LPE4 126 aa16.61■□□□□ 0.25
VIM-203ENST00000469543 A0A1W2PPZ6 126 aa16.61■□□□□ 0.25
VIM-203ENST00000469543 B8ZZF3 427 aa16.61■□□□□ 0.25
VIM-203ENST00000469543 BCL2L11O43521 198 aa16.61■□□□□ 0.25
VIM-203ENST00000469543 SERPINA5P05154 406 aa16.61■□□□□ 0.25
VIM-203ENST00000469543 NR2C1P13056 603 aa16.61■□□□□ 0.25
VIM-203ENST00000469543 TBPP20226 339 aa16.61■□□□□ 0.25
VIM-203ENST00000469543 ZNF92Q03936 586 aa16.61■□□□□ 0.25
VIM-203ENST00000469543 SMUG1Q53HV7 270 aa16.61■□□□□ 0.25
VIM-203ENST00000469543 FAHD2BQ6P2I3 314 aaPredicted RBP16.61■□□□□ 0.25
VIM-203ENST00000469543 PXT1Q8NFP0 134 aa16.61■□□□□ 0.25
VIM-203ENST00000469543 OR5AP2Q8NGF4 316 aa16.61■□□□□ 0.25
VIM-203ENST00000469543 FAHD2AQ96GK7 314 aa16.61■□□□□ 0.25
VIM-203ENST00000469543 PLA2G3Q9NZ20 509 aa16.61■□□□□ 0.25
VIM-203ENST00000469543 A0A0B4J2A0 478 aa16.61■□□□□ 0.25
VIM-203ENST00000469543 IGKV1-12A0A0C4DH73 117 aa16.61■□□□□ 0.25
VIM-203ENST00000469543 TSPAN4O14817 238 aa16.61■□□□□ 0.25
VIM-203ENST00000469543 MTRF1O75570 445 aaKnown RBP16.61■□□□□ 0.25
VIM-203ENST00000469543 OR2F2O95006 317 aa16.61■□□□□ 0.25
VIM-203ENST00000469543 IGKV1D-12P01611 117 aa16.61■□□□□ 0.25
VIM-203ENST00000469543 CCNOP22674 350 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 101.3 ms