RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 TMEM38BQ9NVV0 291 aa7.81□□□□□ -1.16
SYNE1-217ENST00000466159 EHFQ9NZC4 300 aa7.81□□□□□ -1.16
SYNE1-217ENST00000466159 ZNF581Q9P0T4 197 aa7.81□□□□□ -1.16
SYNE1-217ENST00000466159 MCTS1Q9ULC4 181 aaKnown RBP7.81□□□□□ -1.16
SYNE1-217ENST00000466159 SESN1Q9Y6P5 492 aa7.81□□□□□ -1.16
SYNE1-217ENST00000466159 COL27A1Q8IZC6 1860 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-217ENST00000466159 FAM230AA0A1W2PPH8 454 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 SPRY1O43609 319 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-217ENST00000466159 SFT2D2O95562 160 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 IGHEP01854 428 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 LCATP04180 440 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 TMEM225BP0DP42 221 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 ICAM2P13598 275 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 CPT2P23786 658 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 FPR2P25090 351 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 PSMB6P28072 239 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 EIF3IQ13347 325 aaKnown RBP7.8□□□□□ -1.16
SYNE1-217ENST00000466159 RAB35Q15286 201 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 NKAPLQ5M9Q1 402 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 DRAM2Q6UX65 266 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 C6orf15Q6UXA7 325 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-217ENST00000466159 UNQ6126/PRO20091Q6UXV3 157 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 PEG10Q86TG7 708 aaKnown RBP7.8□□□□□ -1.16
SYNE1-217ENST00000466159 FAM219AQ8IW50 185 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 STPG2Q8N412 459 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 INO80EQ8NBZ0 244 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-217ENST00000466159 OR1F12Q8NHA8 337 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 KCNE4Q8WWG9 221 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 ZNF845Q96IR2 970 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-217ENST00000466159 ADGRG7Q96K78 797 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 SLC25A32Q9H2D1 315 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 RASL12Q9NYN1 266 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 OSGIN2Q9Y236 505 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 CSAG2Q9Y5P2 127 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 ARID1AO14497 2285 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 IGKV1-27A0A075B6S5 117 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 DNPH1O43598 174 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 GP1BAP07359 652 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 CST2P09228 141 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 PGAM2P15259 253 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 ACP1P24666 158 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 GDF1P27539 372 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 PSG4Q00888 419 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 ANKRD55Q3KP44 614 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 SPINK14Q6IE38 97 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 OVCH2Q7RTZ1 564 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 BHLHE23Q8NDY6 225 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 PXT1Q8NFP0 134 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 OR5AP2Q8NGF4 316 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 C10orf35Q96D05 121 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 RNF126Q9BV68 326 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 PPA2Q9H2U2 334 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 PLEKHJ1Q9NW61 149 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 P4HTMQ9NXG6 502 aa7.8□□□□□ -1.16
SYNE1-217ENST00000466159 FREM1Q5H8C1 2179 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 SERPINE3A8MV23 424 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 F5H0A9 414 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-217ENST00000466159 H0YIZ8 118 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 IGHV3-9P01782 118 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 HTR5AP47898 357 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 CYB561P49447 251 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 TAS2R46P59540 309 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 SSPNQ14714 243 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 TAF9Q16594 264 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 CEACAM16Q2WEN9 425 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 CHRFAM7AQ494W8 412 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 H3F3CQ6NXT2 135 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 PLXDC2Q6UX71 529 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 HSD17B13Q7Z5P4 300 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-217ENST00000466159 TMEM17Q86X19 198 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 NAXEQ8NCW5 288 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 OR2V1Q8NHB1 315 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 CPT1CQ8TCG5 803 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 ABHD3Q8WU67 409 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 PSMF1Q92530 271 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 DCUN1D4Q92564 292 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 RRNAD1Q96FB5 475 aaKnown RBP7.79□□□□□ -1.16
SYNE1-217ENST00000466159 Q96M66 194 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 NECAB3Q96P71 396 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-217ENST00000466159 CDC6Q99741 560 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 NMES1Q9C002 83 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 MS4A7Q9GZW8 240 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-217ENST00000466159 FIGNL2A6NMB9 653 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 DHRS7CA6NNS2 312 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 MSTNO14793 375 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 KNG1P01042 644 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 SERPINA5P05154 406 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 HOXD4P09016 255 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-217ENST00000466159 RFC3P40938 356 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 SCRN3Q0VDG4 424 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 MOB3CQ70IA8 216 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 RAB11FIP2Q7L804 512 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 SULF2Q8IWU5 870 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 DEFB123Q8N688 67 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 OR10C1Q96KK4 312 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 FOXB1Q99853 325 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 FAAP24Q9BTP7 215 aa7.79□□□□□ -1.16
SYNE1-217ENST00000466159 BARX1Q9HBU1 254 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-217ENST00000466159 GPR179Q6PRD1 2367 aa7.78□□□□□ -1.16
SYNE1-217ENST00000466159 KNTC1P50748 2209 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms