RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 RIMS3Q9UJD0 308 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 MIA3Q5JRA6 1907 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 A0A087WX48 190 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 OR5H15A6NDH6 313 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 OR5H1A6NKK0 313 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 LOC730098B7Z3J9 87 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 M0R233 179 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 MYL12BO14950 172 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 SLC31A1O15431 190 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 SYT7O43581 403 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 OR2T1O43869 369 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 B4GALT3O60512 393 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 GABARAPO95166 117 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 NDUFB8O95169 186 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 IGHG4P01861 327 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 IFNW1P05000 195 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 SERPINE1P05121 402 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 LINC00271P0C7V0 271 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 C1QTNF9P0C862 333 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 GZMBP10144 247 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 ABOP16442 354 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 MYL12AP19105 171 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 CELP19835 753 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 HOXD9P28356 352 aaPredicted RBP4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 CDKN2BP42772 138 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 TCL1AP56279 114 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 EIF2B1Q14232 305 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 SPIN4Q56A73 249 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 PRSS54Q6PEW0 395 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 ZNF474Q6S9Z5 364 aaPredicted RBP4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 PAMR1Q6UXH9 720 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 ZNF367Q7RTV3 350 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 TMEM105Q8N8V8 129 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 SLC16A11Q8NCK7 471 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 BEST4Q8NFU0 473 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 OR11H4Q8NGC9 324 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 HAVCR2Q8TDQ0 301 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 APOBEC3DQ96AK3 386 aaPredicted RBP4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 MYADMQ96S97 322 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 MRPL57Q9BQC6 102 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 CBWD1Q9BRT8 395 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 H2AFJQ9BTM1 129 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 C1QTNF5Q9BXJ0 243 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 GALNT9Q9HCQ5 603 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 UBQLN4Q9NRR5 601 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 INPP5EQ9NRR6 644 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 DUS2Q9NX74 493 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 PRODH2Q9UF12 536 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 HSPB8Q9UJY1 196 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 CARHSP1Q9Y2V2 147 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 CMAHPQ9Y471 501 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 TIMM10BQ9Y5J6 103 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 MAP1BP46821 2468 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 TTC3P53804 2025 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 IGHV2OR16-5A0A0B4J2B6 119 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 LOC100130705A0A1B0GUX0 176 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 A0A1W2PPV9 198 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 C1orf226A1L170 272 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 ZNF840PA6NDX5 716 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 ARL5CA6NH57 179 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 B4DXG7 233 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 NPIPB11E5RHQ5 1161 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 PRYO14603 147 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 ZNF432O94892 652 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 FARS2O95363 451 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 KLK1P06870 262 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 GIPP09681 153 aaPredicted RBP4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 GGT1P19440 569 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 CRHBPP24387 322 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 BDKRB1P46663 353 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 RPL21P46778 160 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 OR3A4PP47883 348 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 RPL29P47914 159 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 CLDN2P57739 230 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 FOXL1Q12952 345 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 P2RY6Q15077 328 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 C1orf194Q5T5A4 169 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 TEDDM1Q5T9Z0 273 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 LIPKQ5VXJ0 399 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 ZNF773Q6PK81 442 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 ZNF841Q6ZN19 808 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 STRADAQ7RTN6 431 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 PRSS45Q7RTY3 260 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 OR2W3Q7Z3T1 314 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 NIT1Q86X76 327 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 ZNF761Q86XN6 746 aaPredicted RBP4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 ZNF614Q8N883 585 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 ACOT4Q8N9L9 421 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 OR52E4Q8NGH9 312 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 OR2Y1Q8NGV0 311 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 OR56B4Q8NH76 319 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 OR1S1Q8NH92 325 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 RPEQ96AT9 228 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 GPR146Q96CH1 333 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 RDH12Q96NR8 316 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 OR6C1Q96RD1 312 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 GPR22Q99680 433 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 NRIP2Q9BQI9 281 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 ZNF649Q9BS31 505 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 LINC00470Q9BZP3 86 aa4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms