RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 ANKRD13BQ86YJ7 626 aa13.35□□□□□ -0.27
USP40-206ENST00000443711 OR11L1Q8NGX0 322 aa13.35□□□□□ -0.27
USP40-206ENST00000443711 RPL3LQ92901 407 aaKnown RBP13.35□□□□□ -0.27
USP40-206ENST00000443711 CPNE2Q96FN4 548 aaPredicted RBP13.35□□□□□ -0.27
USP40-206ENST00000443711 KCTD7Q96MP8 289 aa13.35□□□□□ -0.27
USP40-206ENST00000443711 TLNRD1Q9H1K6 362 aa13.35□□□□□ -0.27
USP40-206ENST00000443711 GCM1Q9NP62 436 aa13.35□□□□□ -0.27
USP40-206ENST00000443711 DLL4Q9NR61 685 aa13.35□□□□□ -0.27
USP40-206ENST00000443711 UFSP2Q9NUQ7 469 aa13.35□□□□□ -0.27
USP40-206ENST00000443711 ITPR2Q14571 2701 aa13.35□□□□□ -0.27
USP40-206ENST00000443711 TANC2Q9HCD6 1990 aa13.34□□□□□ -0.27
USP40-206ENST00000443711 IGKV1-27A0A075B6S5 117 aa13.34□□□□□ -0.27
USP40-206ENST00000443711 PDCD5O14737 125 aa13.34□□□□□ -0.27
USP40-206ENST00000443711 CDC14BO60729 498 aa13.34□□□□□ -0.27
USP40-206ENST00000443711 IGHV4-39P01824 125 aa13.34□□□□□ -0.27
USP40-206ENST00000443711 HAAOP46952 286 aa13.34□□□□□ -0.27
USP40-206ENST00000443711 BLMHQ13867 455 aa13.34□□□□□ -0.27
USP40-206ENST00000443711 KISS1Q15726 138 aa13.34□□□□□ -0.27
USP40-206ENST00000443711 MPPED2Q15777 294 aa13.34□□□□□ -0.27
USP40-206ENST00000443711 DDI2Q5TDH0 399 aa13.34□□□□□ -0.27
USP40-206ENST00000443711 HAGHLQ6PII5 290 aaPredicted RBP13.34□□□□□ -0.27
USP40-206ENST00000443711 LRRTM1Q86UE6 522 aa13.34□□□□□ -0.27
USP40-206ENST00000443711 SATL1Q86VE3 508 aa13.34□□□□□ -0.27
USP40-206ENST00000443711 CDH26Q8IXH8 852 aa13.34□□□□□ -0.27
USP40-206ENST00000443711 LRRC75A-AS1Q8N1F1 130 aa13.34□□□□□ -0.27
USP40-206ENST00000443711 NKAIN3Q8N8D7 197 aa13.34□□□□□ -0.27
USP40-206ENST00000443711 SCCPDHQ8NBX0 429 aa13.34□□□□□ -0.27
USP40-206ENST00000443711 OR52N4Q8NGI2 321 aa13.34□□□□□ -0.27
USP40-206ENST00000443711 HPS1Q92902 700 aa13.34□□□□□ -0.27
USP40-206ENST00000443711 PERPQ96FX8 193 aa13.34□□□□□ -0.27
USP40-206ENST00000443711 GPER1Q99527 375 aa13.34□□□□□ -0.27
USP40-206ENST00000443711 CENPOQ9BU64 300 aa13.34□□□□□ -0.27
USP40-206ENST00000443711 MYOZ1Q9NP98 299 aaPredicted RBP13.34□□□□□ -0.27
USP40-206ENST00000443711 C1orf123Q9NWV4 160 aa13.34□□□□□ -0.27
USP40-206ENST00000443711 NAV2Q8IVL1 2488 aa13.34□□□□□ -0.27
USP40-206ENST00000443711 LRRC30A6NM36 301 aa13.33□□□□□ -0.28
USP40-206ENST00000443711 J3QT63 122 aa13.33□□□□□ -0.28
USP40-206ENST00000443711 CDIPTO14735 213 aa13.33□□□□□ -0.28
USP40-206ENST00000443711 SSX4O60224 188 aa13.33□□□□□ -0.28
USP40-206ENST00000443711 LY6HO94772 140 aa13.33□□□□□ -0.28
USP40-206ENST00000443711 IRF2P14316 349 aa13.33□□□□□ -0.28
USP40-206ENST00000443711 COL8A2P25067 703 aa13.33□□□□□ -0.28
USP40-206ENST00000443711 ZNF93P35789 620 aaPredicted RBP13.33□□□□□ -0.28
USP40-206ENST00000443711 LSM3P62310 102 aaKnown RBP13.33□□□□□ -0.28
USP40-206ENST00000443711 HFEQ30201 348 aa13.33□□□□□ -0.28
USP40-206ENST00000443711 GLT8D1Q68CQ7 371 aa13.33□□□□□ -0.28
USP40-206ENST00000443711 TPRA1Q86W33 373 aa13.33□□□□□ -0.28
USP40-206ENST00000443711 ANGPTL5Q86XS5 388 aa13.33□□□□□ -0.28
USP40-206ENST00000443711 CLVS1Q8IUQ0 354 aaPredicted RBP13.33□□□□□ -0.28
USP40-206ENST00000443711 C11orf53Q8IXP5 236 aa13.33□□□□□ -0.28
USP40-206ENST00000443711 MKXQ8IYA7 352 aa13.33□□□□□ -0.28
USP40-206ENST00000443711 ZNF420Q8TAQ5 688 aaPredicted RBP13.33□□□□□ -0.28
USP40-206ENST00000443711 ZNF671Q8TAW3 534 aa13.33□□□□□ -0.28
USP40-206ENST00000443711 Q8TCH9 128 aa13.33□□□□□ -0.28
USP40-206ENST00000443711 AQP3Q92482 292 aa13.33□□□□□ -0.28
USP40-206ENST00000443711 FOXRED1Q96CU9 486 aaPredicted RBP13.33□□□□□ -0.28
USP40-206ENST00000443711 SPACA5Q96QH8 159 aa13.33□□□□□ -0.28
USP40-206ENST00000443711 PKIBQ9C010 78 aa13.33□□□□□ -0.28
USP40-206ENST00000443711 TREM2Q9NZC2 230 aa13.33□□□□□ -0.28
USP40-206ENST00000443711 RNF7Q9UBF6 113 aa13.33□□□□□ -0.28
USP40-206ENST00000443711 hCG_1807616A0A1W2PRN6 198 aa13.32□□□□□ -0.28
USP40-206ENST00000443711 LYNX1G3V0Z9 82 aa13.32□□□□□ -0.28
USP40-206ENST00000443711 LYNX1P0DP58 116 aa13.32□□□□□ -0.28
USP40-206ENST00000443711 ADRA2CP18825 462 aa13.32□□□□□ -0.28
USP40-206ENST00000443711 MPZP25189 248 aa13.32□□□□□ -0.28
USP40-206ENST00000443711 CFHR2P36980 270 aa13.32□□□□□ -0.28
USP40-206ENST00000443711 PMELP40967 661 aa13.32□□□□□ -0.28
USP40-206ENST00000443711 MTNR1BP49286 362 aa13.32□□□□□ -0.28
USP40-206ENST00000443711 POU3F4P49335 361 aa13.32□□□□□ -0.28
USP40-206ENST00000443711 PSMD7P51665 324 aa13.32□□□□□ -0.28
USP40-206ENST00000443711 IL24Q13007 206 aa13.32□□□□□ -0.28
USP40-206ENST00000443711 ZNF181Q2M3W8 571 aa13.32□□□□□ -0.28
USP40-206ENST00000443711 SLC16A12Q6ZSM3 486 aa13.32□□□□□ -0.28
USP40-206ENST00000443711 ZNF826PQ6ZT77 177 aa13.32□□□□□ -0.28
USP40-206ENST00000443711 CALHM1Q8IU99 346 aa13.32□□□□□ -0.28
USP40-206ENST00000443711 C1orf87Q8N0U7 546 aa13.32□□□□□ -0.28
USP40-206ENST00000443711 JAGN1Q8N5M9 183 aa13.32□□□□□ -0.28
USP40-206ENST00000443711 PNLDC1Q8NA58 520 aaKnown RBP13.32□□□□□ -0.28
USP40-206ENST00000443711 OR10Z1Q8NGY1 313 aa13.32□□□□□ -0.28
USP40-206ENST00000443711 CCL17Q92583 94 aa13.32□□□□□ -0.28
USP40-206ENST00000443711 YIPF5Q969M3 257 aa13.32□□□□□ -0.28
USP40-206ENST00000443711 RFT1Q96AA3 541 aa13.32□□□□□ -0.28
USP40-206ENST00000443711 RNF167Q9H6Y7 350 aa13.32□□□□□ -0.28
USP40-206ENST00000443711 POLDIP2Q9Y2S7 368 aa13.32□□□□□ -0.28
USP40-206ENST00000443711 GABARAPO95166 117 aa13.31□□□□□ -0.28
USP40-206ENST00000443711 CYB5AP00167 134 aa13.31□□□□□ -0.28
USP40-206ENST00000443711 TMEM225BP0DP42 221 aa13.31□□□□□ -0.28
USP40-206ENST00000443711 RAB3BP20337 219 aa13.31□□□□□ -0.28
USP40-206ENST00000443711 PDLIM4P50479 330 aa13.31□□□□□ -0.28
USP40-206ENST00000443711 TMBIM6P55061 237 aa13.31□□□□□ -0.28
USP40-206ENST00000443711 PDZK1IP1Q13113 114 aa13.31□□□□□ -0.28
USP40-206ENST00000443711 CARTPTQ16568 116 aa13.31□□□□□ -0.28
USP40-206ENST00000443711 WDR82Q6UXN9 313 aa13.31□□□□□ -0.28
USP40-206ENST00000443711 SLC25A26Q70HW3 274 aa13.31□□□□□ -0.28
USP40-206ENST00000443711 RNF144BQ7Z419 303 aa13.31□□□□□ -0.28
USP40-206ENST00000443711 NAA50Q9GZZ1 169 aaKnown RBP13.31□□□□□ -0.28
USP40-206ENST00000443711 METTL17Q9H7H0 456 aaPredicted RBP13.31□□□□□ -0.28
USP40-206ENST00000443711 CHODLQ9H9P2 273 aa13.31□□□□□ -0.28
USP40-206ENST00000443711 TMEM106BQ9NUM4 274 aa13.31□□□□□ -0.28
USP40-206ENST00000443711 AK6Q9Y3D8 172 aaKnown RBP13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms