RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 C1QL3Q5VWW1 255 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 POMZP3Q6PJE2 187 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 HEPN1Q6WQI6 88 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 COX15Q7KZN9 410 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 ZNF519Q8TB69 540 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 YPEL4Q96NS1 127 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 NUDT16L1Q9BRJ7 211 aaKnown RBP7.55□□□□□ -1.2
HPS4-206ENST00000439453 PTGES2Q9H7Z7 377 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 GAR1Q9NY12 217 aaKnown RBP7.55□□□□□ -1.2
HPS4-206ENST00000439453 ANAPC10Q9UM13 185 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 CHD8Q9HCK8 2581 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 LILRA5A6NI73 299 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 OR2C1O95371 312 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 GLRA1P23415 457 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 GPR3P46089 330 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 RPS10P46783 165 aaKnown RBP7.55□□□□□ -1.2
HPS4-206ENST00000439453 DUSP3P51452 185 aaPredicted RBP7.55□□□□□ -1.2
HPS4-206ENST00000439453 PPP1CAP62136 330 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 TOMM34Q15785 309 aaPredicted RBP7.55□□□□□ -1.2
HPS4-206ENST00000439453 FIP1L1Q6UN15 594 aaKnown RBP7.55□□□□□ -1.2
HPS4-206ENST00000439453 MED25Q71SY5 747 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 SSX9Q7RTT3 188 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 NUP54Q7Z3B4 507 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 PNLDC1Q8NA58 520 aaKnown RBP7.55□□□□□ -1.2
HPS4-206ENST00000439453 SLC25A36Q96CQ1 311 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 PARPBPQ9NWS1 579 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 VSX1Q9NZR4 365 aaPredicted RBP7.55□□□□□ -1.2
HPS4-206ENST00000439453 MSRB2Q9Y3D2 182 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 HDGFL3Q9Y3E1 203 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 DSPP15924 2871 aaKnown RBP7.55□□□□□ -1.2
HPS4-206ENST00000439453 TMEM269A0A1B0GVZ9 245 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 GMFGO60234 142 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 ZNF354AO60765 605 aaPredicted RBP7.55□□□□□ -1.2
HPS4-206ENST00000439453 RPS23P62266 143 aaKnown RBP7.55□□□□□ -1.2
HPS4-206ENST00000439453 RAP1AP62834 184 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 OR13C9Q8NGT0 318 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 OR5H2Q8NGV7 314 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 OR13G1Q8NGZ3 307 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 SLC25A43Q8WUT9 341 aaPredicted RBP7.55□□□□□ -1.2
HPS4-206ENST00000439453 OR10A5Q9H207 317 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 KCNJ16Q9NPI9 418 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 UBQLN4Q9NRR5 601 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 GFOD1Q9NXC2 390 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 USP24Q9UPU5 2620 aa7.55□□□□□ -1.2
HPS4-206ENST00000439453 URB1O60287 2271 aaKnown RBP7.54□□□□□ -1.2
HPS4-206ENST00000439453 A0A0A6YYD4 124 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 TMEM14DPA8MWL7 114 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 MT-CO3P00414 261 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 PRH1P02810 166 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 GSTP1P09211 210 aaKnown RBP7.54□□□□□ -1.2
HPS4-206ENST00000439453 DANCRP0C864 163 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 RPS2P15880 293 aaKnown RBP7.54□□□□□ -1.2
HPS4-206ENST00000439453 IAH1Q2TAA2 248 aaPredicted RBP7.54□□□□□ -1.2
HPS4-206ENST00000439453 UBAC2Q8NBM4 344 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 GNRHR2Q96P88 292 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 DGAT2Q96PD7 388 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 SLC35B3Q9H1N7 401 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 PRDM13Q9H4Q3 707 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 PPP4R1LQ9P1A2 415 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 SLC5A6Q9Y289 635 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 COA3Q9Y2R0 106 aaPredicted RBP7.54□□□□□ -1.2
HPS4-206ENST00000439453 SCDO00767 359 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 CHRM2P08172 466 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 OR13C7P0DN81 318 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 CAMLGP49069 296 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 RBP2P50120 134 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 PLAC9Q5JTB6 97 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 RPUSD3Q6P087 351 aaKnown RBP7.54□□□□□ -1.2
HPS4-206ENST00000439453 ZNF101Q8IZC7 436 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 MR1Q95460 341 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 S100A13Q99584 98 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 LPAR5Q9H1C0 372 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 CUTCQ9NTM9 273 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 LUZP4Q9P127 313 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 FBXO7Q9Y3I1 522 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 TRAV36DV7A0A075B6V5 113 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 IGHV5-10-1A0A0J9YXX1 117 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 FIGNL2A6NMB9 653 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 H7C1Q1 480 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 SOCS1O15524 211 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 HCRTR1O43613 425 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 DEDDO75618 318 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 CXCR1P25024 350 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 ERV3-1Q14264 604 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 ZNF124Q15973 351 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 AADACL3Q5VUY0 350 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 DCXRQ7Z4W1 244 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 LHFPL1Q86WI0 220 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 ADAT3Q96EY9 351 aaPredicted RBP7.54□□□□□ -1.2
HPS4-206ENST00000439453 ARV1Q9H2C2 271 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 TXNIPQ9H3M7 391 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 C19orf12Q9NSK7 152 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 DOK5Q9P104 306 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 FBLN5Q9UBX5 448 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 OSGIN2Q9Y236 505 aa7.54□□□□□ -1.2
HPS4-206ENST00000439453 RAD51DO75771 328 aa7.53□□□□□ -1.2
HPS4-206ENST00000439453 CD63P08962 238 aa7.53□□□□□ -1.2
HPS4-206ENST00000439453 HIST1H1BP16401 226 aaKnown RBP7.53□□□□□ -1.2
HPS4-206ENST00000439453 HIST1H1DP16402 221 aaKnown RBP7.53□□□□□ -1.2
HPS4-206ENST00000439453 AMY2BP19961 511 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms