RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 HSPB7Q9UBY9 170 aa8.74□□□□□ -1.01
USP54-205ENST00000424265 BORCS7-ASMTA0A0B4J1R7 106 aa8.74□□□□□ -1.01
USP54-205ENST00000424265 PPP1CAP62136 330 aa8.74□□□□□ -1.01
USP54-205ENST00000424265 RAET1LQ5VY80 246 aa8.74□□□□□ -1.01
USP54-205ENST00000424265 MED25Q71SY5 747 aa8.74□□□□□ -1.01
USP54-205ENST00000424265 HAO2Q9NYQ3 351 aa8.74□□□□□ -1.01
USP54-205ENST00000424265 FGF16O43320 207 aa8.74□□□□□ -1.01
USP54-205ENST00000424265 GNG7O60262 68 aa8.74□□□□□ -1.01
USP54-205ENST00000424265 HPRT1P00492 218 aa8.74□□□□□ -1.01
USP54-205ENST00000424265 DCTDP32321 178 aa8.74□□□□□ -1.01
USP54-205ENST00000424265 ARF6P62330 175 aa8.74□□□□□ -1.01
USP54-205ENST00000424265 INSL4Q14641 139 aa8.74□□□□□ -1.01
USP54-205ENST00000424265 CALHM3Q86XJ0 350 aa8.74□□□□□ -1.01
USP54-205ENST00000424265 SMPDL3BQ92485 455 aa8.74□□□□□ -1.01
USP54-205ENST00000424265 ORAI3Q9BRQ5 295 aa8.74□□□□□ -1.01
USP54-205ENST00000424265 GPR52Q9Y2T5 361 aa8.74□□□□□ -1.01
USP54-205ENST00000424265 NOTCH4Q99466 2003 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 J3KTA2 159 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 J3QLW9 94 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 DLL1O00548 723 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 CTDSPLO15194 276 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 OR7C2O60412 319 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 NKX2-2O95096 273 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 ZNF19P17023 458 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 GLRA1P23415 457 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 ACVR1BP36896 505 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 GPR4P46093 362 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 ATP1B3P54709 279 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 TMEM205Q6UW68 189 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 DRAM2Q6UX65 266 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 ANKRD37Q7Z713 158 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 OR5AP2Q8NGF4 316 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 TSLPQ969D9 159 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 C16orf58Q96GQ5 468 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 MS4A10Q96PG2 267 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 MEGF9Q9H1U4 602 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 PLSCR2Q9NRY7 297 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 AK6Q9Y3D8 172 aaKnown RBP8.73□□□□□ -1.01
USP54-205ENST00000424265 IGKV1-8A0A0C4DH67 115 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 PRR19A6NJB7 356 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 B3GALT4O96024 378 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 MELTFP08582 738 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 OR4A8P0C604 315 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 STAG3L2P0CL84 134 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 LSSP48449 732 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 TLE3Q04726 772 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 RBPJQ06330 500 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 OCIAD2Q56VL3 154 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 C1orf194Q5T5A4 169 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 PRAMEF5Q5TYX0 476 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 PRAMEF6Q5VXH4 476 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 KIRREL2Q6UWL6 708 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 SLC16A9Q7RTY1 509 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 KLK11Q9UBX7 282 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 SEMG1P04279 462 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 SERPINA7P05543 415 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 LIPCP11150 499 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 MLF1P58340 268 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 BTG2P78543 158 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 FOXC1Q12948 553 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 TRMT12Q53H54 448 aaKnown RBP8.73□□□□□ -1.01
USP54-205ENST00000424265 CLEC12AQ5QGZ9 265 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 GALNT16Q8N428 558 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 OR51G2Q8NGK0 314 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 OR51F2Q8NH61 342 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 C16orf52Q8NHV5 167 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 SDF2Q99470 211 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 TIMM10BQ9Y5J6 103 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 CKAP5Q14008 2032 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 TGIF2-C20orf24A0A0A6YYL0 155 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 HMGN4O00479 90 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 SMIM10L1P0DMW3 83 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 GABRA4P48169 554 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 SUMO1P63165 101 aaKnown RBP8.73□□□□□ -1.01
USP54-205ENST00000424265 DUSP5Q16690 384 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 OR4A47Q6IF82 309 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 GTF2H5Q6ZYL4 71 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 PRICKLE2Q7Z3G6 844 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 SLC16A11Q8NCK7 471 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 C17orf47Q8NEP4 570 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 OR2T33Q8NG76 320 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 HAS2Q92819 552 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 SMIM10Q96HG1 83 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 PARP12Q9H0J9 701 aaKnown RBP8.73□□□□□ -1.01
USP54-205ENST00000424265 OCIAD1Q9NX40 245 aa8.73□□□□□ -1.01
USP54-205ENST00000424265 AMY2AP04746 511 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 ZNF823P16415 610 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 SLC25A35Q3KQZ1 300 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 ACSM3Q53FZ2 586 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 MRPL2Q5T653 305 aaKnown RBP8.72□□□□□ -1.01
USP54-205ENST00000424265 TVP23CQ96ET8 276 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 CITED1Q99966 193 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 PAM16Q9Y3D7 125 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 A0A087WUJ7 227 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 TSPAN2O60636 221 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 FCMRO60667 390 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 PGA4P0DJD7 388 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 PGA5P0DJD9 388 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 GCH1P30793 250 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 GNRHRP30968 328 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms