RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 PRSS56P0CW18 603 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 NID1P14543 1247 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 LINC00696Q6ZRV3 163 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 OR5C1Q8NGR4 320 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 SLAMF6Q96DU3 332 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 TOE1Q96GM8 510 aaKnown RBP12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 PCNX2A6NKB5 2137 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 CLDN2P57739 230 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 CLN3Q13286 438 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 NPWQ8N729 165 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 AKR7A3O95154 331 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 PIGAP37287 484 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 PTGFRP43088 359 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 SYT14P1Q58G82 188 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 FAM117AQ9C073 453 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 DIO1P49895 249 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 MAMSTRQ6ZN01 415 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 SLC16A13Q7RTY0 426 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 SIRT6Q8N6T7 355 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 OR5M1Q8NGP8 315 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 NID2Q14112 1375 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 HCRTO43612 131 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 LYZP61626 148 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 Q8IYB0 196 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 ADPRHL1Q8NDY3 354 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 PIK3IP1Q96FE7 263 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 FBXO4Q9UKT5 387 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 TDRD15B5MCY1 1934 aaKnown RBP12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 PDE6DO43924 150 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 FAAP20Q6NZ36 180 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 OR4C13Q8NGP0 309 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 OR2A5Q96R48 311 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 SPTBN1Q01082 2364 aaKnown RBP12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 MROH1Q8NDA8 1641 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 SLC6A1P30531 599 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 CCL11P51671 97 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 TMEM38AQ9H6F2 299 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 EPXP11678 715 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 TWIST1Q15672 202 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 LPAL2Q16609 132 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 ZNF766Q5HY98 468 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 EDAQ92838 391 aa12.06□□□□□ -0.48
CCDC88A-204ENST00000413716 PRRG2O14669 202 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 AKR7A2O43488 359 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 SLC46A2Q9BY10 475 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 LPAR3Q9UBY5 353 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 TMED3Q9Y3Q3 217 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 C11orf94C9JXX5 98 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 CTNSO60931 367 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 PGA4P0DJD7 388 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 PGA5P0DJD9 388 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 CACNG7P62955 275 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 OSR2Q8N2R0 312 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 N4BP2Q86UW6 1770 aaPredicted RBP12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 K7ESF4 209 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 SSX8Q7RTT4 187 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 PROCRQ9UNN8 238 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 IGHV3-9P01782 118 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 PI3P19957 117 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 SAXO2Q658L1 398 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 TMEM167BQ9NRX6 74 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 SLC45A1Q9Y2W3 748 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 BCL9LQ86UU0 1499 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 ZNF142P52746 1687 aaPredicted RBP12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 SMPD2O60906 423 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 VAMP5O95183 116 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 IL24Q13007 206 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 FZD2Q14332 565 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 GPNMBQ14956 572 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 COL8A1P27658 744 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 MDGA1Q8NFP4 955 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 ZIC5Q96T25 663 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 GDE1Q9NZC3 331 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 ZNF253O75346 499 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 CD3DP04234 171 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 LGALS7P47929 136 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 RBFOX3A6NFN3 312 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 IFITM5A6NNB3 132 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 CD38P28907 300 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 FGF8P55075 233 aaPredicted RBP12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 MYBPHQ13203 477 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 BSXQ3C1V8 233 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 MIOXQ9UGB7 285 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 CADP27708 2225 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 BCL9O00512 1426 aa12.05□□□□□ -0.48
CCDC88A-204ENST00000413716 SCN4AP35499 1836 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 FURINP09958 794 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 CTU1Q7Z7A3 348 aaKnown RBP12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 SNRNP40Q96DI7 357 aaKnown RBP12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 R4GMQ9 66 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 M0R296 226 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 UBE2L3P68036 154 aaKnown RBP12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 ASTLQ6HA08 431 aaPredicted RBP12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 MARCH3Q86UD3 253 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 OR10G8Q8NGN5 311 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 EGLN2Q96KS0 407 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 OR2W1Q9Y3N9 320 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 MED12Q93074 2177 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms