RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 HLA-BQ31612 363 aa5.47□□□□□ -1.53
SCN1A-203ENST00000409050 GGNBP1Q5YKI7 109 aa5.47□□□□□ -1.53
SCN1A-203ENST00000409050 TMEM65Q6PI78 240 aa5.47□□□□□ -1.53
SCN1A-203ENST00000409050 SLC25A26Q70HW3 274 aa5.47□□□□□ -1.53
SCN1A-203ENST00000409050 LRRTM1Q86UE6 522 aa5.47□□□□□ -1.53
SCN1A-203ENST00000409050 RBM45Q8IUH3 476 aaKnown RBP5.47□□□□□ -1.53
SCN1A-203ENST00000409050 OR6X1Q8NH79 312 aa5.47□□□□□ -1.53
SCN1A-203ENST00000409050 DERL3Q96Q80 235 aa5.47□□□□□ -1.53
SCN1A-203ENST00000409050 NEURL2Q9BR09 285 aa5.47□□□□□ -1.53
SCN1A-203ENST00000409050 LANCL2Q9NS86 450 aa5.47□□□□□ -1.53
SCN1A-203ENST00000409050 SIRT3Q9NTG7 399 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-203ENST00000409050 TMEFF2Q9UIK5 374 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-203ENST00000409050 VAX2Q9UIW0 290 aa5.47□□□□□ -1.53
SCN1A-203ENST00000409050 PPP1R3CQ9UQK1 317 aa5.47□□□□□ -1.53
SCN1A-203ENST00000409050 C3orf85A0A1B0GTC6 90 aa5.46□□□□□ -1.53
SCN1A-203ENST00000409050 TMEM210A6NLX4 147 aa5.46□□□□□ -1.53
SCN1A-203ENST00000409050 HS3ST1O14792 307 aa5.46□□□□□ -1.53
SCN1A-203ENST00000409050 SLC2A10O95528 541 aa5.46□□□□□ -1.53
SCN1A-203ENST00000409050 PTBP3O95758 552 aaKnown RBP5.46□□□□□ -1.53
SCN1A-203ENST00000409050 IGFBP1P08833 259 aaPredicted RBP5.46□□□□□ -1.53
SCN1A-203ENST00000409050 VDAC1P21796 283 aa5.46□□□□□ -1.53
SCN1A-203ENST00000409050 MPGP29372 298 aa5.46□□□□□ -1.53
SCN1A-203ENST00000409050 SRD5A2P31213 254 aa5.46□□□□□ -1.53
SCN1A-203ENST00000409050 ADPRHL1Q8NDY3 354 aa5.46□□□□□ -1.53
SCN1A-203ENST00000409050 KISS1RQ969F8 398 aaPredicted RBP5.46□□□□□ -1.53
SCN1A-203ENST00000409050 DIRC2Q96SL1 478 aa5.46□□□□□ -1.53
SCN1A-203ENST00000409050 SLC2A8Q9NY64 477 aa5.46□□□□□ -1.53
SCN1A-203ENST00000409050 CLCF1Q9UBD9 225 aa5.46□□□□□ -1.53
SCN1A-203ENST00000409050 LRP12Q9Y561 859 aa5.46□□□□□ -1.53
SCN1A-203ENST00000409050 ATP23Q9Y6H3 246 aa5.46□□□□□ -1.53
SCN1A-203ENST00000409050 C4AP0C0L4 1744 aa5.46□□□□□ -1.53
SCN1A-203ENST00000409050 PKD1L3Q7Z443 1732 aa5.46□□□□□ -1.53
SCN1A-203ENST00000409050 NRXN3Q9Y4C0 1643 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 A0A1B0GU03 582 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 FAM90A10PA6NDY2 464 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 FAM90A18PA6NE21 464 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 FAM90A16PA6NEW6 464 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 FAM90A20PA6NIJ5 464 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 FAM90A8PA6NJQ4 464 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 FAM90A7PA6NKC0 464 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 FAM90A22PA8MWA6 464 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 FAM90A12PA8MX19 464 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 FAM90A5PA8MXJ8 464 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 FAM90A23PA8MXZ1 464 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 PYCARD-AS1I3L0S3 204 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 GAPDHP04406 335 aaKnown RBP5.46□□□□□ -1.54
SCN1A-203ENST00000409050 SP1P08047 785 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 GUSBP08236 651 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 FAM90A15PP0C7V4 464 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 FAM90A13PP0C7W8 464 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 FAM90A14PP0C7W9 464 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 FAM90A24PP0C7X0 464 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 CD82P27701 267 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 PTGFRP43088 359 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 STUMQ69YW2 141 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 AMIGO3Q86WK7 504 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 OR2T10Q8NGZ9 312 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 SLC7A10Q9NS82 523 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 DHCR7Q9UBM7 475 aaKnown RBP5.46□□□□□ -1.54
SCN1A-203ENST00000409050 PRNDQ9UKY0 176 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 CES1P1Q9UKY3 287 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 ZNF835Q9Y2P0 537 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 TNFSF12-TNFSF13A0A0A6YY99 330 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 C5orf49A4QMS7 147 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 A6NL46 340 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 TNFSF12O43508 249 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 IGHA1P01876 353 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 SEMG1P04279 462 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 S100A4P26447 101 aaKnown RBP5.46□□□□□ -1.54
SCN1A-203ENST00000409050 HAAOP46952 286 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 KRTDAPP60985 99 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 DHRS2Q13268 280 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 Q1RN00 199 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 TRIM61Q5EBN2 209 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 ZNF770Q6IQ21 691 aaPredicted RBP5.46□□□□□ -1.54
SCN1A-203ENST00000409050 CORO6Q6QEF8 472 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 IFI44Q8TCB0 444 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 ABHD1Q96SE0 405 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 CXXC4Q9H2H0 198 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 OR51B6Q9H340 312 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 TBC1D29Q9UFV1 150 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 PLCH1Q4KWH8 1693 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 TMEM238LA0A1B0GVL6 79 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 SERTM2A0A1B0GWG4 89 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 A6NJY4 79 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 SIRPB1O00241 398 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 CTAG2O75638 210 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 IGF2P01344 180 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 ZGLP1P0C6A0 271 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 GABRA1P14867 456 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 GZMHP20718 246 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 FCER1GP30273 86 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 PCBP3P57721 371 aaKnown RBP5.46□□□□□ -1.54
SCN1A-203ENST00000409050 SERF2P84101 59 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 BSXQ3C1V8 233 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 ZNF528Q3MIS6 628 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 DMKNQ6E0U4 476 aaPredicted RBP5.46□□□□□ -1.54
SCN1A-203ENST00000409050 KIRREL2Q6UWL6 708 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 SLC25A33Q9BSK2 321 aa5.46□□□□□ -1.54
SCN1A-203ENST00000409050 GNB4Q9HAV0 340 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 124.4 ms