RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 A0A1B0GUV1 79 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 TINCRA0A1B0GVN0 87 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 METTL15A6NJ78 407 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 PFDN6O15212 129 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 CRXO43186 299 aaPredicted RBP3.26□□□□□ -1.89
HMGB1-204ENST00000399489 HPRT1P00492 218 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 RLN2P04090 185 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 BCHEP06276 602 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 HCKP08631 526 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 PGA4P0DJD7 388 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 PGA3P0DJD8 388 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 PGA5P0DJD9 388 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 CT45A10P0DMU9 189 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 SCGB1A1P11684 91 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 ADORA2BP29275 332 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 ARL2P36404 184 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 GLP1RP43220 463 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 BTDP43251 543 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 GALR1P47211 349 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 GABRA4P48169 554 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 RORCP51449 518 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 CRYBA4P53673 196 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 ZNF121P58317 390 aaPredicted RBP3.26□□□□□ -1.89
HMGB1-204ENST00000399489 SEMG2Q02383 582 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 RPL18AQ02543 176 aaKnown RBP3.26□□□□□ -1.89
HMGB1-204ENST00000399489 PRPSAP1Q14558 356 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 TRIP13Q15645 432 aaPredicted RBP3.26□□□□□ -1.89
HMGB1-204ENST00000399489 MAPK14Q16539 360 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 TMEM30BQ3MIR4 351 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 C14orf28Q4W4Y0 310 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 SPIN4Q56A73 249 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 UBE2UQ5VVX9 321 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 RPL13AP3Q6NVV1 102 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 CD200R1LQ6Q8B3 271 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 SH2D5Q6ZV89 423 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 TMEM144Q7Z5S9 345 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 NFE4Q86UQ8 179 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 HOGA1Q86XE5 327 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 RIMKLAQ8IXN7 391 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 OR8G5Q8NG78 346 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 COQ8AQ8NI60 647 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 OR51E1Q8TCB6 317 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 AGAP11Q8TF27 550 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 RAB8BQ92930 207 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 PIK3IP1Q96FE7 263 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 PRAC1Q96KF2 57 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 ZNF599Q96NL3 588 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 PFDN5Q99471 154 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 NUDT9Q9BW91 350 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 C1QTNF4Q9BXJ3 329 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 UGT2B28Q9BY64 529 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 SRXN1Q9BYN0 137 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 PRORYQ9H606 182 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 ZNF442Q9H7R0 627 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 MOB1AQ9H8S9 216 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 ZNF556Q9HAH1 456 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 UGT1A7Q9HAW7 530 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 ZNF71Q9NQZ8 489 aaPredicted RBP3.26□□□□□ -1.89
HMGB1-204ENST00000399489 TREM2Q9NZC2 230 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 KCNIP1Q9NZI2 227 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 RWDD2AQ9UIY3 292 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 ERVK-7P63135 1459 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 CAMSAP2Q08AD1 1489 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 SCN5AQ14524 2016 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 FLT4P35916 1363 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 TMEM2Q9UHN6 1383 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 ZNF726A6NNF4 738 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 TSTD3H0UI37 97 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 UBDO15205 165 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 SSNA1O43805 119 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 RAD1O60671 282 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 CNIH1O95406 144 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 TYMSP04818 313 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 FUT3P21217 361 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 S100PP25815 95 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 GRPRP30550 384 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 SERPINB5P36952 375 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 GPR6P46095 362 aaPredicted RBP3.25□□□□□ -1.89
HMGB1-204ENST00000399489 PPOXP50336 477 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 DLX6P56179 175 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 TEAD2Q15562 447 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 KIAA1644Q3SXP7 199 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 TTLL9Q3SXZ7 439 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 C9orf57Q5W0N0 161 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 DHRS4L2Q6PKH6 230 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 CPNE9Q8IYJ1 553 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 RAB42Q8N4Z0 105 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 METTL27Q8N6F8 245 aaPredicted RBP3.25□□□□□ -1.89
HMGB1-204ENST00000399489 TMEM161BQ8NDZ6 487 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 OR1M1Q8NGA1 313 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 OR10X1Q8NGY0 326 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 CASTOR1Q8WTX7 329 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 RERGQ96A58 199 aaPredicted RBP3.25□□□□□ -1.89
HMGB1-204ENST00000399489 TESCQ96BS2 214 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 DNAJC19Q96DA6 116 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 ZMYND19Q96E35 227 aaPredicted RBP3.25□□□□□ -1.89
HMGB1-204ENST00000399489 SFRP2Q96HF1 295 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 PSMB7Q99436 277 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 C12orf57Q99622 126 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 SDHCQ99643 169 aaPredicted RBP3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms