RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 USP43Q70EL4 1123 aa8.7□□□□□ -1.02
NEDD8-202ENST00000396828 PRSS45Q7RTY3 260 aa8.7□□□□□ -1.02
NEDD8-202ENST00000396828 CEACAM19Q7Z692 300 aa8.7□□□□□ -1.02
NEDD8-202ENST00000396828 NAA40Q86UY6 237 aa8.7□□□□□ -1.02
NEDD8-202ENST00000396828 C3orf56Q8N813 242 aa8.7□□□□□ -1.02
NEDD8-202ENST00000396828 CCDC54Q8NEL0 328 aa8.7□□□□□ -1.02
NEDD8-202ENST00000396828 OR8B12Q8NGG6 310 aa8.7□□□□□ -1.02
NEDD8-202ENST00000396828 OR5L1Q8NGL2 311 aa8.7□□□□□ -1.02
NEDD8-202ENST00000396828 PHYHIPQ92561 330 aa8.7□□□□□ -1.02
NEDD8-202ENST00000396828 TAF15Q92804 592 aaKnown RBP eCLIP8.7□□□□□ -1.02
NEDD8-202ENST00000396828 RPL3LQ92901 407 aaKnown RBP8.7□□□□□ -1.02
NEDD8-202ENST00000396828 APOBEC3DQ96AK3 386 aaPredicted RBP8.7□□□□□ -1.02
NEDD8-202ENST00000396828 C12orf43Q96C57 262 aaKnown RBP8.7□□□□□ -1.02
NEDD8-202ENST00000396828 KCTD7Q96MP8 289 aa8.7□□□□□ -1.02
NEDD8-202ENST00000396828 NAA50Q9GZZ1 169 aaKnown RBP8.7□□□□□ -1.02
NEDD8-202ENST00000396828 RGCCQ9H4X1 137 aa8.7□□□□□ -1.02
NEDD8-202ENST00000396828 C7orf69Q9H7B7 122 aa8.7□□□□□ -1.02
NEDD8-202ENST00000396828 MMP26Q9NRE1 261 aa8.7□□□□□ -1.02
NEDD8-202ENST00000396828 TXNL4BQ9NX01 149 aaKnown RBP8.7□□□□□ -1.02
NEDD8-202ENST00000396828 GPR160Q9UJ42 338 aa8.7□□□□□ -1.02
NEDD8-202ENST00000396828 ZNF391Q9UJN7 358 aa8.7□□□□□ -1.02
NEDD8-202ENST00000396828 HHLA2Q9UM44 414 aa8.7□□□□□ -1.02
NEDD8-202ENST00000396828 DHDHQ9UQ10 334 aa8.7□□□□□ -1.02
NEDD8-202ENST00000396828 VWFP04275 2813 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 A0A0G2JMP0 313 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 A0A0X1KG70 313 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 LOC107986453A0A1B0GWG9 222 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 ZNF879B4DU55 563 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 J3QW42 95 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 P2RY10O00398 339 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 KCNAB3O43448 404 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 XRCC2O43543 280 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 MTRF1O75570 445 aaKnown RBP8.69□□□□□ -1.02
NEDD8-202ENST00000396828 CD2P06729 351 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 CFL1P23528 166 aaKnown RBP8.69□□□□□ -1.02
NEDD8-202ENST00000396828 GCH1P30793 250 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 VBP1P61758 197 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 MALLQ13021 153 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 PSG7Q13046 419 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 ZNF718Q3SXZ3 478 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 AWAT1Q58HT5 328 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 ZMAT1Q5H9K5 638 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 FAM209AQ5JX71 171 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 FOXB2Q5VYV0 432 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 MBNL2Q5VZF2 373 aaKnown RBP8.69□□□□□ -1.02
NEDD8-202ENST00000396828 C22orf42Q6IC83 251 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 DOK3Q7L591 496 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 RDH10Q8IZV5 341 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 DEFB108BQ8NET1 73 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 OR4M2Q8NGB6 313 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 OR13C3Q8NGS6 347 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 OR51E1Q8TCB6 317 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 RAB1CQ92928 201 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 DVL3Q92997 716 aaPredicted RBP8.69□□□□□ -1.02
NEDD8-202ENST00000396828 PPP1R14AQ96A00 147 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 RAB39BQ96DA2 213 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 ELMOD3Q96FG2 381 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 DUX5Q96PT3 197 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 OR14A2Q96R54 314 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 GAL3ST1Q99999 423 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 CENPOQ9BU64 300 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 GPR84Q9NQS5 396 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 PPIAL4AQ9Y536 164 aa8.69□□□□□ -1.02
NEDD8-202ENST00000396828 SOX21Q9Y651 276 aaPredicted RBP8.69□□□□□ -1.02
NEDD8-202ENST00000396828 TRBV5-5A0A0J9YX44 114 aa8.68□□□□□ -1.02
NEDD8-202ENST00000396828 ISPDA4D126 451 aa8.68□□□□□ -1.02
NEDD8-202ENST00000396828 TRAPPC2LH3BP13 241 aa8.68□□□□□ -1.02
NEDD8-202ENST00000396828 TRIM77I1YAP6 450 aa8.68□□□□□ -1.02
NEDD8-202ENST00000396828 SC5DO75845 299 aa8.68□□□□□ -1.02
NEDD8-202ENST00000396828 MYL9P24844 172 aa8.68□□□□□ -1.02
NEDD8-202ENST00000396828 SOX2P48431 317 aa8.68□□□□□ -1.02
NEDD8-202ENST00000396828 PPP1CBP62140 327 aa8.68□□□□□ -1.02
NEDD8-202ENST00000396828 NCS1P62166 190 aa8.68□□□□□ -1.02
NEDD8-202ENST00000396828 RPS11P62280 158 aaKnown RBP eCLIP8.68□□□□□ -1.02
NEDD8-202ENST00000396828 TUSC1Q2TAM9 212 aa8.68□□□□□ -1.02
NEDD8-202ENST00000396828 SNAI3Q3KNW1 292 aa8.68□□□□□ -1.02
NEDD8-202ENST00000396828 HSD17B12Q53GQ0 312 aa8.68□□□□□ -1.02
NEDD8-202ENST00000396828 KLF17Q5JT82 389 aaPredicted RBP8.68□□□□□ -1.02
NEDD8-202ENST00000396828 UNQ9370/PRO34162Q6UXP9 181 aa8.68□□□□□ -1.02
NEDD8-202ENST00000396828 TMEM91Q6ZNR0 172 aa8.68□□□□□ -1.02
NEDD8-202ENST00000396828 Q6ZR03 302 aa8.68□□□□□ -1.02
NEDD8-202ENST00000396828 COLCA1Q6ZS62 124 aa8.68□□□□□ -1.02
NEDD8-202ENST00000396828 C1orf174Q8IYL3 243 aa8.68□□□□□ -1.02
NEDD8-202ENST00000396828 BCL6BQ8N143 479 aaPredicted RBP8.68□□□□□ -1.02
NEDD8-202ENST00000396828 OR13C5Q8NGS8 318 aa8.68□□□□□ -1.02
NEDD8-202ENST00000396828 NANPQ8TBE9 248 aa8.68□□□□□ -1.02
NEDD8-202ENST00000396828 RGP1Q92546 391 aaPredicted RBP8.68□□□□□ -1.02
NEDD8-202ENST00000396828 ITFG2Q969R8 447 aa8.68□□□□□ -1.02
NEDD8-202ENST00000396828 TMEM106AQ96A25 262 aa8.68□□□□□ -1.02
NEDD8-202ENST00000396828 REEP6Q96HR9 211 aa8.68□□□□□ -1.02
NEDD8-202ENST00000396828 C1orf147Q96MC9 270 aaPredicted RBP8.68□□□□□ -1.02
NEDD8-202ENST00000396828 SLITRK2Q9H156 845 aa8.68□□□□□ -1.02
NEDD8-202ENST00000396828 OPA3Q9H6K4 179 aa8.68□□□□□ -1.02
NEDD8-202ENST00000396828 PLEKHA1Q9HB21 404 aa8.68□□□□□ -1.02
NEDD8-202ENST00000396828 TBCCD1Q9NVR7 557 aa8.68□□□□□ -1.02
NEDD8-202ENST00000396828 CKLFQ9UBR5 152 aa8.68□□□□□ -1.02
NEDD8-202ENST00000396828 PLSCR5A0PG75 271 aa8.67□□□□□ -1.02
NEDD8-202ENST00000396828 H3BSH0 61 aa8.67□□□□□ -1.02
NEDD8-202ENST00000396828 J3QLI3 93 aa8.67□□□□□ -1.02
NEDD8-202ENST00000396828 ICMTO60725 284 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms