RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 CLPSP04118 112 aa9.02□□□□□ -0.96
COL6A3-205ENST00000392004 SERPINA5P05154 406 aa9.02□□□□□ -0.96
COL6A3-205ENST00000392004 ATP1B3P54709 279 aa9.02□□□□□ -0.96
COL6A3-205ENST00000392004 FXYD6P3P58550 94 aa9.02□□□□□ -0.96
COL6A3-205ENST00000392004 FXYD4P59646 89 aa9.02□□□□□ -0.96
COL6A3-205ENST00000392004 TMEM69Q5SWH9 247 aa9.02□□□□□ -0.96
COL6A3-205ENST00000392004 Q6ZTK2 550 aa9.02□□□□□ -0.96
COL6A3-205ENST00000392004 TMEM17Q86X19 198 aa9.02□□□□□ -0.96
COL6A3-205ENST00000392004 ARMC10Q8N2F6 343 aa9.02□□□□□ -0.96
COL6A3-205ENST00000392004 RFLNBQ8N5W9 214 aa9.02□□□□□ -0.96
COL6A3-205ENST00000392004 CMBLQ96DG6 245 aa9.02□□□□□ -0.96
COL6A3-205ENST00000392004 S100A16Q96FQ6 103 aaKnown RBP9.02□□□□□ -0.96
COL6A3-205ENST00000392004 WDYHV1Q96HA8 205 aa9.02□□□□□ -0.96
COL6A3-205ENST00000392004 ESRP2Q9H6T0 727 aaKnown RBP9.02□□□□□ -0.96
COL6A3-205ENST00000392004 DOPEY1Q5JWR5 2465 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 DXOO77932 396 aaKnown RBP9.02□□□□□ -0.97
COL6A3-205ENST00000392004 NFYBP25208 207 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 COL8A1P27658 744 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 RPL22L1Q6P5R6 122 aaKnown RBP9.02□□□□□ -0.97
COL6A3-205ENST00000392004 OTOSQ8NHW6 89 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 SMIM4Q8WVI0 70 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 URM1Q9BTM9 101 aaKnown RBP9.02□□□□□ -0.97
COL6A3-205ENST00000392004 AUNIPQ9H7T9 357 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 HRASLSQ9HDD0 168 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 PCDHGA9Q9Y5G4 932 aaKnown RBP9.02□□□□□ -0.97
COL6A3-205ENST00000392004 CEP192Q8TEP8 1941 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 IGKV1D-43A0A0B4J1Z2 117 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 COX6B1P14854 86 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 ZNF17P17021 662 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 ZNF93P35789 620 aaPredicted RBP9.02□□□□□ -0.97
COL6A3-205ENST00000392004 ZP1P60852 638 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 ACSF3Q4G176 576 aaPredicted RBP9.02□□□□□ -0.97
COL6A3-205ENST00000392004 OR2G2Q8NGZ5 317 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 TOMM40LQ969M1 308 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 PLK3Q9H4B4 646 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 TAAR3PQ9P1P4 343 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 S100A9P06702 114 aaKnown RBP9.02□□□□□ -0.97
COL6A3-205ENST00000392004 LPLP06858 475 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 ASAH2BP0C7U1 165 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 SELEP16581 610 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 VAMP1P23763 118 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 FAUP35544 74 aaKnown RBP9.02□□□□□ -0.97
COL6A3-205ENST00000392004 RPL35P42766 123 aaKnown RBP9.02□□□□□ -0.97
COL6A3-205ENST00000392004 GRB2P62993 217 aaKnown RBP9.02□□□□□ -0.97
COL6A3-205ENST00000392004 FLI1Q01543 452 aaPredicted RBP9.02□□□□□ -0.97
COL6A3-205ENST00000392004 GSG1LQ6UXU4 331 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 C17orf107Q6ZR85 190 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 Q6ZS92 163 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 TMUB2Q71RG4 321 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 FOXRED2Q8IWF2 684 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 C20orf196Q8IYI0 205 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 LGALS14Q8TCE9 139 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 ST8SIA2Q92186 375 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 NINJ1Q92982 152 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 WNT2BQ93097 391 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 AMELYQ99218 206 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 FAM234AQ9H0X4 552 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 ZNF175Q9Y473 711 aa9.02□□□□□ -0.97
COL6A3-205ENST00000392004 AIPO00170 330 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 TRAF3IP2O43734 574 aaPredicted RBP9.01□□□□□ -0.97
COL6A3-205ENST00000392004 NMBP08949 121 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 LHX2P50458 406 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 DLX5P56178 289 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 KLF9Q13886 244 aaPredicted RBP9.01□□□□□ -0.97
COL6A3-205ENST00000392004 TAF9Q16594 264 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 UBE2NLQ5JXB2 153 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 SSX6Q7RTT6 188 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 DOLPP1Q86YN1 238 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 SCCPDHQ8NBX0 429 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 OR10AC1Q8NH08 325 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 EGLN1Q9GZT9 426 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 MED9Q9NWA0 146 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 NPTNQ9Y639 398 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 OR6C6A6NF89 314 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 ZNF732B4DXR9 585 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 MCRIP1C9JLW8 97 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 SLC33A1O00400 549 aaPredicted RBP9.01□□□□□ -0.97
COL6A3-205ENST00000392004 PLPP2O43688 288 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 NRASP01111 189 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 ATF1P18846 271 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 CXCL2P19875 107 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 FOXO1Q12778 655 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 CCDC36Q8IYA8 594 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 LINC00518Q8N0U6 118 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 CLRN3Q8NCR9 226 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 FAM57AQ8TBR7 257 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 ADAMTS17Q8TE56 1095 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 ASB5Q8WWX0 329 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 SLC6A7Q99884 636 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 ZNF275Q9NSD4 429 aaPredicted RBP9.01□□□□□ -0.97
COL6A3-205ENST00000392004 PRELID3BQ9Y3B1 194 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 GSTZ1O43708 216 aaPredicted RBP9.01□□□□□ -0.97
COL6A3-205ENST00000392004 ZNF432O94892 652 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 CNOT4O95628 575 aaKnown RBP9.01□□□□□ -0.97
COL6A3-205ENST00000392004 NGFP01138 241 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 UCHL1P09936 223 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 GLI4P10075 376 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 CLDN18P56856 261 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 SLC35D3Q5M8T2 416 aa9.01□□□□□ -0.97
COL6A3-205ENST00000392004 FNDC7Q5VTL7 733 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms