RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 LAP3P28838 519 aa19.67■□□□□ 0.74
TRIM28-202ENST00000341753 SNCAP37840 140 aa19.67■□□□□ 0.74
TRIM28-202ENST00000341753 DCAF7P61962 342 aa19.67■□□□□ 0.74
TRIM28-202ENST00000341753 SEMA6DQ8NFY4 1073 aa19.67■□□□□ 0.74
TRIM28-202ENST00000341753 URM1Q9BTM9 101 aaKnown RBP19.67■□□□□ 0.74
TRIM28-202ENST00000341753 DEDDO75618 318 aa19.67■□□□□ 0.74
TRIM28-202ENST00000341753 GLP1RP43220 463 aa19.67■□□□□ 0.74
TRIM28-202ENST00000341753 FOXF1Q12946 379 aa19.67■□□□□ 0.74
TRIM28-202ENST00000341753 RNF212Q495C1 297 aa19.67■□□□□ 0.74
TRIM28-202ENST00000341753 GGNBP1Q5YKI7 109 aa19.67■□□□□ 0.74
TRIM28-202ENST00000341753 OR2AJ1Q8NGZ0 328 aa19.67■□□□□ 0.74
TRIM28-202ENST00000341753 EMG1Q92979 244 aaKnown RBP19.67■□□□□ 0.74
TRIM28-202ENST00000341753 ZNF2Q9BSG1 426 aaPredicted RBP19.67■□□□□ 0.74
TRIM28-202ENST00000341753 SH3BGRL3Q9H299 93 aa19.67■□□□□ 0.74
TRIM28-202ENST00000341753 CHRDQ9H2X0 955 aa19.67■□□□□ 0.74
TRIM28-202ENST00000341753 OR51M1Q9H341 326 aa19.67■□□□□ 0.74
TRIM28-202ENST00000341753 C1orf123Q9NWV4 160 aa19.67■□□□□ 0.74
TRIM28-202ENST00000341753 METTL1Q9UBP6 276 aaKnown RBP19.67■□□□□ 0.74
TRIM28-202ENST00000341753 ADAM10O14672 748 aa19.66■□□□□ 0.74
TRIM28-202ENST00000341753 DIRAS3O95661 229 aa19.66■□□□□ 0.74
TRIM28-202ENST00000341753 OR13C7P0DN81 318 aa19.66■□□□□ 0.74
TRIM28-202ENST00000341753 SERINC1Q9NRX5 453 aa19.66■□□□□ 0.74
TRIM28-202ENST00000341753 STARD10Q9Y365 291 aa19.66■□□□□ 0.74
TRIM28-202ENST00000341753 LILRA5A6NI73 299 aa19.66■□□□□ 0.74
TRIM28-202ENST00000341753 FIGNL2A6NMB9 653 aa19.66■□□□□ 0.74
TRIM28-202ENST00000341753 UMAD1C9J7I0 102 aa19.66■□□□□ 0.74
TRIM28-202ENST00000341753 HSD11B2P80365 405 aa19.66■□□□□ 0.74
TRIM28-202ENST00000341753 C5orf46Q6UWT4 87 aa19.66■□□□□ 0.74
TRIM28-202ENST00000341753 OR1L3Q8NH93 324 aa19.66■□□□□ 0.74
TRIM28-202ENST00000341753 WFDC1Q9HC57 220 aa19.66■□□□□ 0.74
TRIM28-202ENST00000341753 MUC3AQ02505 3323 aa19.65■□□□□ 0.74
TRIM28-202ENST00000341753 SRFP11831 508 aa19.65■□□□□ 0.74
TRIM28-202ENST00000341753 TAS2R46P59540 309 aa19.65■□□□□ 0.74
TRIM28-202ENST00000341753 C6orf201Q7Z4U5 140 aa19.65■□□□□ 0.74
TRIM28-202ENST00000341753 OR1N1Q8NGS0 311 aa19.65■□□□□ 0.74
TRIM28-202ENST00000341753 TRIOBPQ9H2D6 2365 aa19.65■□□□□ 0.74
TRIM28-202ENST00000341753 TNRC18O15417 2968 aaPredicted RBP19.65■□□□□ 0.74
TRIM28-202ENST00000341753 DHRS7CA6NNS2 312 aa19.65■□□□□ 0.74
TRIM28-202ENST00000341753 STMND1H3BQB6 276 aa19.65■□□□□ 0.74
TRIM28-202ENST00000341753 FOLR1P15328 257 aa19.65■□□□□ 0.74
TRIM28-202ENST00000341753 CAMLGP49069 296 aa19.65■□□□□ 0.74
TRIM28-202ENST00000341753 SULT1A1P50225 295 aa19.65■□□□□ 0.74
TRIM28-202ENST00000341753 ASCL1P50553 236 aa19.65■□□□□ 0.74
TRIM28-202ENST00000341753 CLRN1P58418 232 aa19.65■□□□□ 0.74
TRIM28-202ENST00000341753 ZP4Q12836 540 aa19.65■□□□□ 0.74
TRIM28-202ENST00000341753 ZNF283Q8N7M2 679 aa19.65■□□□□ 0.74
TRIM28-202ENST00000341753 MFSD8Q8NHS3 518 aa19.65■□□□□ 0.74
TRIM28-202ENST00000341753 TMEM234Q8WY98 164 aa19.65■□□□□ 0.74
TRIM28-202ENST00000341753 PECRQ9BY49 303 aa19.65■□□□□ 0.74
TRIM28-202ENST00000341753 NDUFS6O75380 124 aaKnown RBP19.64■□□□□ 0.73
TRIM28-202ENST00000341753 IGHV2-5P01817 119 aa19.64■□□□□ 0.73
TRIM28-202ENST00000341753 PRH1P02810 166 aa19.64■□□□□ 0.73
TRIM28-202ENST00000341753 ARL4DP49703 201 aa19.64■□□□□ 0.73
TRIM28-202ENST00000341753 SULF2Q8IWU5 870 aa19.64■□□□□ 0.73
TRIM28-202ENST00000341753 TDHQ8IZJ6 230 aa19.64■□□□□ 0.73
TRIM28-202ENST00000341753 AKR7LQ8NHP1 331 aa19.64■□□□□ 0.73
TRIM28-202ENST00000341753 SCRT1Q9BWW7 348 aa19.64■□□□□ 0.73
TRIM28-202ENST00000341753 FAM212BQ9NTI7 297 aaPredicted RBP19.64■□□□□ 0.73
TRIM28-202ENST00000341753 MCTS1Q9ULC4 181 aaKnown RBP19.64■□□□□ 0.73
TRIM28-202ENST00000341753 POMT1Q9Y6A1 747 aa19.64■□□□□ 0.73
TRIM28-202ENST00000341753 MASP2O00187 686 aa19.64■□□□□ 0.73
TRIM28-202ENST00000341753 TSC22D1Q15714 1073 aa19.64■□□□□ 0.73
TRIM28-202ENST00000341753 C14orf28Q4W4Y0 310 aa19.64■□□□□ 0.73
TRIM28-202ENST00000341753 OPN5Q6U736 354 aa19.64■□□□□ 0.73
TRIM28-202ENST00000341753 HSD17B11Q8NBQ5 300 aa19.64■□□□□ 0.73
TRIM28-202ENST00000341753 B3GAT1Q9P2W7 334 aa19.64■□□□□ 0.73
TRIM28-202ENST00000341753 GABRR1P24046 479 aa19.63■□□□□ 0.73
TRIM28-202ENST00000341753 KISS1Q15726 138 aa19.63■□□□□ 0.73
TRIM28-202ENST00000341753 TSPO2Q5TGU0 170 aa19.63■□□□□ 0.73
TRIM28-202ENST00000341753 LYPD6BQ8NI32 183 aa19.63■□□□□ 0.73
TRIM28-202ENST00000341753 TOMM40LQ969M1 308 aa19.63■□□□□ 0.73
TRIM28-202ENST00000341753 REEP6Q96HR9 211 aa19.63■□□□□ 0.73
TRIM28-202ENST00000341753 VN1R1Q9GZP7 353 aa19.63■□□□□ 0.73
TRIM28-202ENST00000341753 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP19.63■□□□□ 0.732e-6■■■□□ 16
TRIM28-202ENST00000341753 MYO7BQ6PIF6 2116 aa19.63■□□□□ 0.73
TRIM28-202ENST00000341753 EFNA2O43921 213 aa19.63■□□□□ 0.73
TRIM28-202ENST00000341753 DTX1Q86Y01 620 aa19.63■□□□□ 0.73
TRIM28-202ENST00000341753 TMEM156Q8N614 296 aa19.63■□□□□ 0.73
TRIM28-202ENST00000341753 RHBDD1Q8TEB9 315 aa19.63■□□□□ 0.73
TRIM28-202ENST00000341753 RFNGQ9Y644 331 aa19.63■□□□□ 0.73
TRIM28-202ENST00000341753 FER1L5A0AVI2 2057 aa19.62■□□□□ 0.73
TRIM28-202ENST00000341753 IGHV2-70P01814 119 aa19.62■□□□□ 0.73
TRIM28-202ENST00000341753 GAPDHP04406 335 aaKnown RBP19.62■□□□□ 0.73
TRIM28-202ENST00000341753 ITGA3P26006 1051 aa19.62■□□□□ 0.73
TRIM28-202ENST00000341753 GABREP78334 506 aa19.62■□□□□ 0.73
TRIM28-202ENST00000341753 FAM3AP98173 230 aa19.62■□□□□ 0.73
TRIM28-202ENST00000341753 SGPP2Q8IWX5 399 aa19.62■□□□□ 0.73
TRIM28-202ENST00000341753 ZDHHC12Q96GR4 267 aa19.62■□□□□ 0.73
TRIM28-202ENST00000341753 SHDQ96IW2 340 aa19.62■□□□□ 0.73
TRIM28-202ENST00000341753 RCL1Q9Y2P8 373 aaKnown RBP19.62■□□□□ 0.73
TRIM28-202ENST00000341753 LIPT2A6NK58 231 aa19.62■□□□□ 0.73
TRIM28-202ENST00000341753 LMO7DNF2Z398 122 aa19.62■□□□□ 0.73
TRIM28-202ENST00000341753 H3BMH7 237 aa19.62■□□□□ 0.73
TRIM28-202ENST00000341753 MBPP02686 304 aaPredicted RBP19.62■□□□□ 0.73
TRIM28-202ENST00000341753 S100PP25815 95 aa19.62■□□□□ 0.73
TRIM28-202ENST00000341753 HMGN3Q15651 99 aa19.62■□□□□ 0.73
TRIM28-202ENST00000341753 ZNF565Q8N9K5 539 aa19.62■□□□□ 0.73
TRIM28-202ENST00000341753 WDFY4Q6ZS81 3184 aa19.62■□□□□ 0.73
TRIM28-202ENST00000341753 YIF1AO95070 293 aa19.61■□□□□ 0.73
TRIM28-202ENST00000341753 IFNA21P01568 189 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms