RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 ZNF574Q6ZN55 896 aaPredicted RBP7.8□□□□□ -1.16
RTN3-202ENST00000339997 BHLHA9Q7RTU4 235 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 LFNGQ8NES3 379 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 OR5C1Q8NGR4 320 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 APH1AQ96BI3 265 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 HES7Q9BYE0 225 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 PSENENQ9NZ42 101 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 MTFP1Q9UDX5 166 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 R4GMQ9 66 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 CCDC187A0A096LP49 1063 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 TRBV23-1A0A0A0MS06 115 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 HSFX4A0A1B0GTS1 333 aaPredicted RBP7.79□□□□□ -1.16
RTN3-202ENST00000339997 HSFX3A0A1B0GWH4 333 aaPredicted RBP7.79□□□□□ -1.16
RTN3-202ENST00000339997 ZNF814B7Z6K7 855 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 ZNF207O43670 478 aaKnown RBP7.79□□□□□ -1.16
RTN3-202ENST00000339997 CTAG2O75638 210 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 NAT2P11245 290 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 CTRB1P17538 263 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 GNB1P62873 340 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 SRPXP78539 464 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 INSM1Q01101 510 aaPredicted RBP7.79□□□□□ -1.16
RTN3-202ENST00000339997 ZNF85Q03923 595 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 PMS2P11Q13670 270 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 TOMM34Q15785 309 aaPredicted RBP7.79□□□□□ -1.16
RTN3-202ENST00000339997 LYSMD4Q5XG99 296 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 GGNBP1Q5YKI7 109 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 CTRB2Q6GPI1 263 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 OR10P1Q8NGE3 313 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 HLA-CQ95604 372 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 ZNF251Q9BRH9 671 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 FBXL17Q9UF56 701 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 SHANK1Q9Y566 2161 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 TMEM272A0A1B0GTI8 110 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 CLEC18AA5D8T8 446 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 METTL15P1P0C7V9 234 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 DEFA4P12838 97 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 MGAT2Q10469 447 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 FOXF1Q12946 379 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 CLEC18CQ8NCF0 446 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 CCDC74AQ96AQ1 378 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 OR8B4Q96RC9 309 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 TRIB1Q96RU8 372 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 HDAC8Q9BY41 377 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 UCK1Q9HA47 277 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 PARD6AQ9NPB6 346 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 ANKRD31Q8N7Z5 1873 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 TLCD2A6NGC4 264 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 PNPP00491 289 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 MT-ATP6P00846 226 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 TBPP20226 339 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 AGBL5Q8NDL9 886 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 ZNRF4Q8WWF5 429 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 GNRHR2Q96P88 292 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 SHARPINQ9H0F6 387 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 IL21Q9HBE4 155 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 ZMIZ1Q9ULJ6 1067 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 TRAV39A0A0B4J263 110 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 LOC102723971A0A1B0GUV8 181 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 TERTO14746 1132 aaKnown RBP7.79□□□□□ -1.16
RTN3-202ENST00000339997 TAAR5O14804 337 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 PLPP2O43688 288 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 PIAS2O75928 621 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 GABRA1P14867 456 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 ZNF133P52736 654 aaPredicted RBP7.79□□□□□ -1.16
RTN3-202ENST00000339997 POLR2GP62487 172 aaKnown RBP eCLIP7.79□□□□□ -1.16
RTN3-202ENST00000339997 HIST1H3AP68431 136 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 TMEM52BQ4KMG9 183 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 AWAT1Q58HT5 328 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 BAHD1Q8TBE0 780 aaPredicted RBP7.79□□□□□ -1.16
RTN3-202ENST00000339997 PTP4A1Q93096 173 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 ASB16Q96NS5 453 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 UBL7Q96S82 380 aaPredicted RBP7.79□□□□□ -1.16
RTN3-202ENST00000339997 TXNIPQ9H3M7 391 aa7.79□□□□□ -1.16
RTN3-202ENST00000339997 TRAV1-2A0A0B4J238 106 aa7.78□□□□□ -1.16
RTN3-202ENST00000339997 KIAA1324LA8MWY0 1029 aaPredicted RBP7.78□□□□□ -1.16
RTN3-202ENST00000339997 BMPR1BO00238 502 aa7.78□□□□□ -1.16
RTN3-202ENST00000339997 CT62P0C5K7 136 aa7.78□□□□□ -1.16
RTN3-202ENST00000339997 CTLA4P16410 223 aa7.78□□□□□ -1.16
RTN3-202ENST00000339997 EN2P19622 333 aaPredicted RBP7.78□□□□□ -1.16
RTN3-202ENST00000339997 TMEM33P57088 247 aa7.78□□□□□ -1.16
RTN3-202ENST00000339997 SUMO1P63165 101 aaKnown RBP7.78□□□□□ -1.16
RTN3-202ENST00000339997 IFITM2Q01629 132 aa7.78□□□□□ -1.16
RTN3-202ENST00000339997 ADGRG3Q86Y34 549 aa7.78□□□□□ -1.16
RTN3-202ENST00000339997 OR10V1Q8NGI7 309 aa7.78□□□□□ -1.16
RTN3-202ENST00000339997 OTOSQ8NHW6 89 aa7.78□□□□□ -1.16
RTN3-202ENST00000339997 ZNF596Q8TC21 504 aa7.78□□□□□ -1.16
RTN3-202ENST00000339997 ERGIC1Q969X5 290 aa7.78□□□□□ -1.16
RTN3-202ENST00000339997 WDFY2Q96P53 400 aa7.78□□□□□ -1.16
RTN3-202ENST00000339997 ARHGDIGQ99819 225 aa7.78□□□□□ -1.16
RTN3-202ENST00000339997 SLC25A22Q9H936 323 aa7.78□□□□□ -1.16
RTN3-202ENST00000339997 LYRM4Q9HD34 91 aa7.78□□□□□ -1.16
RTN3-202ENST00000339997 UQCC1Q9NVA1 299 aa7.78□□□□□ -1.16
RTN3-202ENST00000339997 LIPGQ9Y5X9 500 aa7.78□□□□□ -1.16
RTN3-202ENST00000339997 A0A087WUJ7 227 aa7.78□□□□□ -1.16
RTN3-202ENST00000339997 A0A1B0GX78 115 aa7.78□□□□□ -1.16
RTN3-202ENST00000339997 OR2M5A3KFT3 312 aa7.78□□□□□ -1.16
RTN3-202ENST00000339997 ZNF98A6NK75 572 aa7.78□□□□□ -1.16
RTN3-202ENST00000339997 RNF212BA8MTL3 300 aa7.78□□□□□ -1.16
RTN3-202ENST00000339997 ZNF17P17021 662 aa7.78□□□□□ -1.16
RTN3-202ENST00000339997 OR3A4PP47883 348 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms