RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 TMEM50BP56557 158 aa12.13□□□□□ -0.47
SYNE3-201ENST00000334258 SLC37A1P57057 533 aa12.13□□□□□ -0.47
SYNE3-201ENST00000334258 COTL1Q14019 142 aa12.13□□□□□ -0.47
SYNE3-201ENST00000334258 SOHLH1Q5JUK2 328 aa12.13□□□□□ -0.47
SYNE3-201ENST00000334258 SULF2Q8IWU5 870 aa12.13□□□□□ -0.47
SYNE3-201ENST00000334258 OR56B1Q8NGI3 324 aa12.13□□□□□ -0.47
SYNE3-201ENST00000334258 ERGIC1Q969X5 290 aa12.13□□□□□ -0.47
SYNE3-201ENST00000334258 STARD10Q9Y365 291 aa12.13□□□□□ -0.47
SYNE3-201ENST00000334258 IGKV1D-43A0A0B4J1Z2 117 aa12.13□□□□□ -0.47
SYNE3-201ENST00000334258 GLI4P10075 376 aa12.13□□□□□ -0.47
SYNE3-201ENST00000334258 TNFRSF4P43489 277 aa12.13□□□□□ -0.47
SYNE3-201ENST00000334258 STARD6P59095 220 aa12.13□□□□□ -0.47
SYNE3-201ENST00000334258 RAP1AP62834 184 aa12.13□□□□□ -0.47
SYNE3-201ENST00000334258 SPEM2Q0P670 501 aa12.13□□□□□ -0.47
SYNE3-201ENST00000334258 PLCXD2Q0VAA5 305 aa12.13□□□□□ -0.47
SYNE3-201ENST00000334258 SGPP2Q8IWX5 399 aa12.13□□□□□ -0.47
SYNE3-201ENST00000334258 EMG1Q92979 244 aaKnown RBP12.13□□□□□ -0.47
SYNE3-201ENST00000334258 PBDC1Q9BVG4 233 aa12.13□□□□□ -0.47
SYNE3-201ENST00000334258 URGCP-MRPS24S4R325 110 aa12.13□□□□□ -0.47
SYNE3-201ENST00000334258 RP1P56715 2156 aa12.13□□□□□ -0.47
SYNE3-201ENST00000334258 ASCC3Q8N3C0 2202 aaKnown RBP12.12□□□□□ -0.47
SYNE3-201ENST00000334258 FIGNL2A6NMB9 653 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 H0YIG0 161 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 HNRNPA2B1P22626 353 aaKnown RBP12.12□□□□□ -0.47
SYNE3-201ENST00000334258 IGLV3-21P80748 117 aaPredicted RBP12.12□□□□□ -0.47
SYNE3-201ENST00000334258 FAM3AP98173 230 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 PDZD11Q5EBL8 140 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 AADACL3Q5VUY0 350 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 SLC25A43Q8WUT9 341 aaPredicted RBP12.12□□□□□ -0.47
SYNE3-201ENST00000334258 CPNE4Q96A23 557 aaPredicted RBP12.12□□□□□ -0.47
SYNE3-201ENST00000334258 SLC46A1Q96NT5 459 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 NUDT22Q9BRQ3 303 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.12□□□□□ -0.47
SYNE3-201ENST00000334258 CACNA1EQ15878 2313 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 B4DGG1 531 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 XRCC2O43543 280 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 DIRAS3O95661 229 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 GAPDHP04406 335 aaKnown RBP12.12□□□□□ -0.47
SYNE3-201ENST00000334258 CTSEP14091 401 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 BLVRBP30043 206 aaPredicted RBP12.12□□□□□ -0.47
SYNE3-201ENST00000334258 TAS2R46P59540 309 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 PPA1Q15181 289 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 ZNF674Q2M3X9 581 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 NSUN5P2Q63ZY6 315 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 FAM213BQ8TBF2 198 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 PTPMT1Q8WUK0 201 aaPredicted RBP12.12□□□□□ -0.47
SYNE3-201ENST00000334258 TSLPQ969D9 159 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 JSRP1Q96MG2 331 aaPredicted RBP12.12□□□□□ -0.47
SYNE3-201ENST00000334258 SLC35B3Q9H1N7 401 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 TMEM184BQ9Y519 407 aaPredicted RBP12.12□□□□□ -0.47
SYNE3-201ENST00000334258 C2orf72A6NCS6 295 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 SHISA7A6NL88 538 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 TMEM150CB9EJG8 249 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 TNFP01375 233 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 MYF5P13349 255 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 SERPINA2P20848 420 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 RHEBQ15382 184 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 PRTGQ2VWP7 1150 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 DEGS2Q6QHC5 323 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 SUMF2Q8NBJ7 301 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 CCDC54Q8NEL0 328 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 RNF133Q8WVZ7 376 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 C11orf40Q8WZ69 217 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 GABRG3Q99928 467 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 OR10A2Q9H208 303 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 C19orf12Q9NSK7 152 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 FAM206AQ9NX38 181 aa12.12□□□□□ -0.47
SYNE3-201ENST00000334258 NUP210LQ5VU65 1888 aa12.11□□□□□ -0.47
SYNE3-201ENST00000334258 A6NIZ1 184 aa12.11□□□□□ -0.47
SYNE3-201ENST00000334258 SEMA4FO95754 770 aa12.11□□□□□ -0.47
SYNE3-201ENST00000334258 RAP1BP61224 184 aa12.11□□□□□ -0.47
SYNE3-201ENST00000334258 FOXK1P85037 733 aa12.11□□□□□ -0.47
SYNE3-201ENST00000334258 GGNBP1Q5YKI7 109 aa12.11□□□□□ -0.47
SYNE3-201ENST00000334258 MRPL24Q96A35 216 aaKnown RBP12.11□□□□□ -0.47
SYNE3-201ENST00000334258 LMAN1LQ9HAT1 526 aa12.11□□□□□ -0.47
SYNE3-201ENST00000334258 GAR1Q9NY12 217 aaKnown RBP12.11□□□□□ -0.47
SYNE3-201ENST00000334258 SOX15O60248 233 aa12.11□□□□□ -0.47
SYNE3-201ENST00000334258 DEDDO75618 318 aa12.11□□□□□ -0.47
SYNE3-201ENST00000334258 CLPSP04118 112 aa12.11□□□□□ -0.47
SYNE3-201ENST00000334258 PTGER4P35408 488 aa12.11□□□□□ -0.47
SYNE3-201ENST00000334258 OR1D4P47884 311 aa12.11□□□□□ -0.47
SYNE3-201ENST00000334258 HTR5AP47898 357 aa12.11□□□□□ -0.47
SYNE3-201ENST00000334258 SP6Q3SY56 376 aa12.11□□□□□ -0.47
SYNE3-201ENST00000334258 PYY3Q5JQD4 70 aa12.11□□□□□ -0.47
SYNE3-201ENST00000334258 SLC22A18ASQ8N1D0 253 aa12.11□□□□□ -0.47
SYNE3-201ENST00000334258 BSCL2Q96G97 398 aaPredicted RBP12.11□□□□□ -0.47
SYNE3-201ENST00000334258 COLQQ9Y215 455 aaPredicted RBP12.11□□□□□ -0.47
SYNE3-201ENST00000334258 CHATP28329 748 aa12.1□□□□□ -0.47
SYNE3-201ENST00000334258 PMELP40967 661 aa12.1□□□□□ -0.47
SYNE3-201ENST00000334258 RBP2P50120 134 aa12.1□□□□□ -0.47
SYNE3-201ENST00000334258 TLE3Q04726 772 aa12.1□□□□□ -0.47
SYNE3-201ENST00000334258 IL15RAQ13261 267 aa12.1□□□□□ -0.47
SYNE3-201ENST00000334258 COMMD1Q8N668 190 aa12.1□□□□□ -0.47
SYNE3-201ENST00000334258 OR10D4PQ8NGN7 298 aa12.1□□□□□ -0.47
SYNE3-201ENST00000334258 TOMM40LQ969M1 308 aa12.1□□□□□ -0.47
SYNE3-201ENST00000334258 S100A13Q99584 98 aa12.1□□□□□ -0.47
SYNE3-201ENST00000334258 ZNF2Q9BSG1 426 aaPredicted RBP12.1□□□□□ -0.47
SYNE3-201ENST00000334258 OPN3Q9H1Y3 402 aaPredicted RBP12.1□□□□□ -0.47
SYNE3-201ENST00000334258 SRPK3Q9UPE1 567 aa12.1□□□□□ -0.47
SYNE3-201ENST00000334258 OSGIN2Q9Y236 505 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 734.7 ms