RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 NKX6-3A6NJ46 265 aa13.47□□□□□ -0.25
LSM1-201ENST00000311351 METTL15A6NJ78 407 aa13.47□□□□□ -0.25
LSM1-201ENST00000311351 E9PQ18 207 aa13.47□□□□□ -0.25
LSM1-201ENST00000311351 NRASP01111 189 aa13.47□□□□□ -0.25
LSM1-201ENST00000311351 GLRA1P23415 457 aa13.47□□□□□ -0.25
LSM1-201ENST00000311351 ARF6P62330 175 aa13.47□□□□□ -0.25
LSM1-201ENST00000311351 BAMBIQ13145 260 aa13.47□□□□□ -0.25
LSM1-201ENST00000311351 TP53I3Q53FA7 332 aa13.47□□□□□ -0.25
LSM1-201ENST00000311351 GPR157Q5UAW9 335 aa13.47□□□□□ -0.25
LSM1-201ENST00000311351 METTL11BQ5VVY1 283 aa13.47□□□□□ -0.25
LSM1-201ENST00000311351 OR5A2Q8NGI9 324 aa13.47□□□□□ -0.25
LSM1-201ENST00000311351 AQP3Q92482 292 aa13.47□□□□□ -0.25
LSM1-201ENST00000311351 RORBQ92753 470 aa13.47□□□□□ -0.25
LSM1-201ENST00000311351 GCDHQ92947 438 aaPredicted RBP13.47□□□□□ -0.25
LSM1-201ENST00000311351 ZNF488Q96MN9 340 aa13.47□□□□□ -0.25
LSM1-201ENST00000311351 WDFY2Q96P53 400 aa13.47□□□□□ -0.25
LSM1-201ENST00000311351 S100A14Q9HCY8 104 aa13.47□□□□□ -0.25
LSM1-201ENST00000311351 NLKQ9UBE8 527 aa13.47□□□□□ -0.25
LSM1-201ENST00000311351 TMEM89A2RUT3 159 aa13.46□□□□□ -0.25
LSM1-201ENST00000311351 OR2AT4A6NND4 320 aa13.46□□□□□ -0.25
LSM1-201ENST00000311351 NDUFB3O43676 98 aa13.46□□□□□ -0.25
LSM1-201ENST00000311351 SYNGR1O43759 233 aa13.46□□□□□ -0.25
LSM1-201ENST00000311351 ECDO95905 644 aaPredicted RBP13.46□□□□□ -0.25
LSM1-201ENST00000311351 LIPFP07098 398 aa13.46□□□□□ -0.25
LSM1-201ENST00000311351 CCL1P22362 96 aa13.46□□□□□ -0.25
LSM1-201ENST00000311351 PRTN3P24158 256 aa13.46□□□□□ -0.25
LSM1-201ENST00000311351 MTNR1AP48039 350 aa13.46□□□□□ -0.25
LSM1-201ENST00000311351 TGM4P49221 684 aa13.46□□□□□ -0.25
LSM1-201ENST00000311351 TMED1Q13445 227 aa13.46□□□□□ -0.25
LSM1-201ENST00000311351 DGUOKQ16854 277 aa13.46□□□□□ -0.25
LSM1-201ENST00000311351 DEFB112Q30KQ8 113 aa13.46□□□□□ -0.25
LSM1-201ENST00000311351 CLVS2Q5SYC1 327 aa13.46□□□□□ -0.25
LSM1-201ENST00000311351 ATPAF1Q5TC12 328 aaPredicted RBP13.46□□□□□ -0.25
LSM1-201ENST00000311351 TMEM42Q69YG0 159 aa13.46□□□□□ -0.25
LSM1-201ENST00000311351 ZNF788Q6ZQV5 615 aa13.46□□□□□ -0.25
LSM1-201ENST00000311351 PRSS35Q8N3Z0 413 aa13.46□□□□□ -0.25
LSM1-201ENST00000311351 ANGPTL6Q8NI99 470 aa13.46□□□□□ -0.25
LSM1-201ENST00000311351 ITFG2Q969R8 447 aa13.46□□□□□ -0.25
LSM1-201ENST00000311351 RNFT2Q96EX2 444 aa13.46□□□□□ -0.25
LSM1-201ENST00000311351 SLC29A1Q99808 456 aa13.46□□□□□ -0.25
LSM1-201ENST00000311351 ELL3Q9HB65 397 aaPredicted RBP13.46□□□□□ -0.25
LSM1-201ENST00000311351 ONECUT1Q9UBC0 465 aa13.46□□□□□ -0.25
LSM1-201ENST00000311351 GNG8Q9UK08 70 aa13.46□□□□□ -0.25
LSM1-201ENST00000311351 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.46□□□□□ -0.25
LSM1-201ENST00000311351 IGKV1D-17A0A075B6S4 117 aa13.45□□□□□ -0.26
LSM1-201ENST00000311351 CENPVL3A0A0U1RRI6 287 aa13.45□□□□□ -0.26
LSM1-201ENST00000311351 A0A1B0GVI7 797 aa13.45□□□□□ -0.26
LSM1-201ENST00000311351 SULT1C4O75897 302 aa13.45□□□□□ -0.26
LSM1-201ENST00000311351 KIR3DL2P43630 455 aa13.45□□□□□ -0.26
LSM1-201ENST00000311351 HAAOP46952 286 aa13.45□□□□□ -0.26
LSM1-201ENST00000311351 ISL1P61371 349 aa13.45□□□□□ -0.26
LSM1-201ENST00000311351 SNRPGP62308 76 aaKnown RBP13.45□□□□□ -0.26
LSM1-201ENST00000311351 LRRC10Q5BKY1 277 aa13.45□□□□□ -0.26
LSM1-201ENST00000311351 Q6ZSR3 168 aa13.45□□□□□ -0.26
LSM1-201ENST00000311351 FAM220AQ7Z4H9 259 aa13.45□□□□□ -0.26
LSM1-201ENST00000311351 BATF2Q8N1L9 274 aa13.45□□□□□ -0.26
LSM1-201ENST00000311351 PQLC1Q8N2U9 271 aa13.45□□□□□ -0.26
LSM1-201ENST00000311351 TRMT10AQ8TBZ6 339 aaKnown RBP13.45□□□□□ -0.26
LSM1-201ENST00000311351 NPRL2Q8WTW4 380 aa13.45□□□□□ -0.26
LSM1-201ENST00000311351 TRUB1Q8WWH5 349 aaKnown RBP13.45□□□□□ -0.26
LSM1-201ENST00000311351 H1FXQ92522 213 aaKnown RBP13.45□□□□□ -0.26
LSM1-201ENST00000311351 STMN2Q93045 179 aa13.45□□□□□ -0.26
LSM1-201ENST00000311351 LHX4Q969G2 390 aa13.45□□□□□ -0.26
LSM1-201ENST00000311351 RNF166Q96A37 237 aaPredicted RBP13.45□□□□□ -0.26
LSM1-201ENST00000311351 TMIGD2Q96BF3 282 aa13.45□□□□□ -0.26
LSM1-201ENST00000311351 DNTTIP1Q9H147 329 aa13.45□□□□□ -0.26
LSM1-201ENST00000311351 ZNF222Q9UK12 451 aa13.45□□□□□ -0.26
LSM1-201ENST00000311351 LOC107986453A0A1B0GWG9 222 aa13.44□□□□□ -0.26
LSM1-201ENST00000311351 PQLC2LA1A4F0 135 aa13.44□□□□□ -0.26
LSM1-201ENST00000311351 J3QT63 122 aa13.44□□□□□ -0.26
LSM1-201ENST00000311351 DLGAP1O14490 977 aa13.44□□□□□ -0.26
LSM1-201ENST00000311351 SIGLEC5O15389 551 aa13.44□□□□□ -0.26
LSM1-201ENST00000311351 SYT7O43581 403 aa13.44□□□□□ -0.26
LSM1-201ENST00000311351 PSG2P11465 335 aa13.44□□□□□ -0.26
LSM1-201ENST00000311351 GABRA2P47869 451 aa13.44□□□□□ -0.26
LSM1-201ENST00000311351 DLX1P56177 255 aa13.44□□□□□ -0.26
LSM1-201ENST00000311351 IL13RA1P78552 427 aa13.44□□□□□ -0.26
LSM1-201ENST00000311351 PRB3Q04118 309 aaPredicted RBP13.44□□□□□ -0.26
LSM1-201ENST00000311351 SLC9A3R2Q15599 337 aa13.44□□□□□ -0.26
LSM1-201ENST00000311351 OCLNQ16625 522 aa13.44□□□□□ -0.26
LSM1-201ENST00000311351 C11orf91Q3C1V1 193 aa13.44□□□□□ -0.26
LSM1-201ENST00000311351 VMO1Q7Z5L0 202 aa13.44□□□□□ -0.26
LSM1-201ENST00000311351 PDZD9Q8IXQ8 264 aa13.44□□□□□ -0.26
LSM1-201ENST00000311351 POC1AQ8NBT0 407 aa13.44□□□□□ -0.26
LSM1-201ENST00000311351 LY6G5BQ8NDX9 201 aa13.44□□□□□ -0.26
LSM1-201ENST00000311351 ZNF671Q8TAW3 534 aa13.44□□□□□ -0.26
LSM1-201ENST00000311351 TAF15Q92804 592 aaKnown RBP eCLIP13.44□□□□□ -0.26
LSM1-201ENST00000311351 DCTN5Q9BTE1 182 aa13.44□□□□□ -0.26
LSM1-201ENST00000311351 C9orf16Q9BUW7 83 aa13.44□□□□□ -0.26
LSM1-201ENST00000311351 CNTD2Q9H8S5 307 aa13.44□□□□□ -0.26
LSM1-201ENST00000311351 PLEKHA1Q9HB21 404 aa13.44□□□□□ -0.26
LSM1-201ENST00000311351 SLC25A10Q9UBX3 287 aaPredicted RBP13.44□□□□□ -0.26
LSM1-201ENST00000311351 GMPPBQ9Y5P6 360 aa13.44□□□□□ -0.26
LSM1-201ENST00000311351 ANKRD61A6NGH8 418 aa13.43□□□□□ -0.26
LSM1-201ENST00000311351 DHRS7CA6NNS2 312 aa13.43□□□□□ -0.26
LSM1-201ENST00000311351 J3QRE1 110 aa13.43□□□□□ -0.26
LSM1-201ENST00000311351 RNASE1P07998 156 aaKnown RBP13.43□□□□□ -0.26
LSM1-201ENST00000311351 ACAA1P09110 424 aaPredicted RBP13.43□□□□□ -0.26
LSM1-201ENST00000311351 PGA5P0DJD9 388 aa13.43□□□□□ -0.26
LSM1-201ENST00000311351 NDUFB7P17568 137 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms