RNA–Protein interactions for RNA: ENST00000299847.6

CHRFAM7A-201, Transcript of CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHRFAM7A, Length 6,220 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRFAM7A-201ENST00000299847 HGDQ93099 445 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 DUSP21Q9H596 190 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 P4HTMQ9NXG6 502 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 TMEM30CPA0ZSE6 113 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 SULT1A3P0DMM9 295 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 SULT1A4P0DMN0 295 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 GALNSP34059 522 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 SPINK14Q6IE38 97 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 NHLRC1Q6VVB1 395 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 GPR87Q9BY21 358 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 HES4Q9HCC6 221 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 HDGFL3Q9Y3E1 203 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 ITGBL1O95965 494 aaPredicted RBP12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 FAM3AP98173 230 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 FAM53BQ14153 422 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 ZNF485Q8NCK3 441 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 ZNF596Q8TC21 504 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 M1APQ8TC57 530 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 MCHR2Q969V1 340 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 ABHD14AQ9BUJ0 271 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 NRAPQ86VF7 1730 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 N4BP2Q86UW6 1770 aaPredicted RBP12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 OR1L4Q8NGR5 311 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 LINC00615Q96LM1 132 aaPredicted RBP12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 NGFP01138 241 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 SLC25A5P05141 298 aaKnown RBP12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 COL9A1P20849 921 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 TIAL1Q01085 375 aaKnown RBP eCLIP12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 C11orf87Q6NUJ2 197 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 GVQW1Q8N7I0 195 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 C12orf57Q99622 126 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 UCK1Q9HA47 277 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 FZD6O60353 706 aa12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 LPAR6P43657 344 aa12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 ST3GAL2Q16842 350 aa12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 APOBEC3DQ96AK3 386 aaPredicted RBP12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 OR2D2Q9H210 308 aa12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 MMP25Q9NPA2 562 aa12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 KIF13AQ9H1H9 1805 aa12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 XKRY2A2RUG3 117 aa12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 MBP02144 154 aa12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 TRAPPC2P0DI81 140 aa12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 TRAPPC2BP0DI82 140 aa12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 KISS1Q15726 138 aa12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 MYPOPQ86VE0 399 aaPredicted RBP12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 LSM2Q9Y333 95 aaKnown RBP12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 F5H697 171 aa12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 PHOX2AO14813 284 aa12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 ETFDHQ16134 617 aa12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 B3GNTL1Q67FW5 361 aaPredicted RBP12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 LRP11Q86VZ4 500 aa12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 CIB3Q96Q77 187 aaPredicted RBP12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 DOK1Q99704 481 aa12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 PARD6AQ9NPB6 346 aa12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 CSF2RBP32927 897 aa12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 MMP15P51511 669 aa12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 TMEM215Q68D42 235 aa12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 LINC01555Q8NAE3 123 aa12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 MRGPRDQ8TDS7 321 aa12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 MTCH2Q9Y6C9 303 aa12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 AGFG2O95081 481 aa12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 PTBP3O95758 552 aaKnown RBP12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 TMEM92Q6UXU6 159 aa12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 SH2D5Q6ZV89 423 aa12.12□□□□□ -0.47
CHRFAM7A-201ENST00000299847 TRAV34A0A0B4J273 112 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 PRSS44E7EML9 344 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 CT62P0C5K7 136 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 ZNF425Q6IV72 752 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 TMEM37Q8WXS4 190 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 SLC25A22Q9H936 323 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 OR1A1Q9P1Q5 309 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 A0A0B4J2E0 115 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 A0A1B0GX12 115 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 RNASEK-C17orf49H0YIS7 233 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 AMTP48728 403 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 LHX8Q68G74 356 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 DNAJB12Q9NXW2 375 aaKnown RBP12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 ARRDC5A6NEK1 342 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 FXYD1O00168 92 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 ZNHIT1O43257 154 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 ZNF32P17041 273 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 TOMM34Q15785 309 aaPredicted RBP12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 PABPC1L2AQ5JQF8 200 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 TEX261Q6UWH6 196 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 U3KQ87 197 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 ITGB4P16144 1822 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 TRAV1-2A0A0B4J238 106 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 FAM24AA6NFZ4 105 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 LRRC3CA6NJW4 275 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 SNRPGP15A8MWD9 76 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 LMO7DNF2Z398 122 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 CYR61O00622 381 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 SCGB1C2P0DMR2 95 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 GALR1P47211 349 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 CTF1Q16619 201 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 PRICKLE4Q2TBC4 344 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 C12orf73Q69YU5 71 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 ZMIZ1Q9ULJ6 1067 aa12.11□□□□□ -0.47
CHRFAM7A-201ENST00000299847 HTN1P15515 57 aa12.1□□□□□ -0.47
CHRFAM7A-201ENST00000299847 PPP1CBP62140 327 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms