RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 LEMD1Q68G75 181 aa13□□□□□ -0.33
PTPRA-201ENST00000216877 CNKSR3Q6P9H4 555 aa13□□□□□ -0.33
PTPRA-201ENST00000216877 ERASQ7Z444 233 aa13□□□□□ -0.33
PTPRA-201ENST00000216877 LINC00346Q8IVM7 164 aa13□□□□□ -0.33
PTPRA-201ENST00000216877 OR52N4Q8NGI2 321 aa13□□□□□ -0.33
PTPRA-201ENST00000216877 ACTR3CQ9C0K3 210 aaPredicted RBP13□□□□□ -0.33
PTPRA-201ENST00000216877 VN1R1Q9GZP7 353 aa13□□□□□ -0.33
PTPRA-201ENST00000216877 MRPS18CQ9Y3D5 142 aaKnown RBP13□□□□□ -0.33
PTPRA-201ENST00000216877 LOC107986453A0A1B0GWG9 222 aa13□□□□□ -0.33
PTPRA-201ENST00000216877 CST7O76096 145 aa13□□□□□ -0.33
PTPRA-201ENST00000216877 SRP19P09132 144 aaKnown RBP13□□□□□ -0.33
PTPRA-201ENST00000216877 BCKDHBP21953 392 aa13□□□□□ -0.33
PTPRA-201ENST00000216877 APOBEC1P41238 236 aaKnown RBP13□□□□□ -0.33
PTPRA-201ENST00000216877 EGR3Q06889 387 aa13□□□□□ -0.33
PTPRA-201ENST00000216877 GNMTQ14749 295 aa13□□□□□ -0.33
PTPRA-201ENST00000216877 ADAMTS18Q8TE60 1221 aa13□□□□□ -0.33
PTPRA-201ENST00000216877 NUS1Q96E22 293 aa13□□□□□ -0.33
PTPRA-201ENST00000216877 MRGPRX4Q96LA9 322 aa13□□□□□ -0.33
PTPRA-201ENST00000216877 RPH3ALQ9UNE2 315 aa13□□□□□ -0.33
PTPRA-201ENST00000216877 B3GALT5Q9Y2C3 310 aa13□□□□□ -0.33
PTPRA-201ENST00000216877 KAT7O95251 611 aa12.99□□□□□ -0.33
PTPRA-201ENST00000216877 IGHEP01854 428 aa12.99□□□□□ -0.33
PTPRA-201ENST00000216877 GAPDHP04406 335 aaKnown RBP12.99□□□□□ -0.33
PTPRA-201ENST00000216877 SNU13P55769 128 aaKnown RBP12.99□□□□□ -0.33
PTPRA-201ENST00000216877 RUNX1Q01196 453 aa12.99□□□□□ -0.33
PTPRA-201ENST00000216877 PRDX1Q06830 199 aaKnown RBP12.99□□□□□ -0.33
PTPRA-201ENST00000216877 PHLDA2Q53GA4 152 aa12.99□□□□□ -0.33
PTPRA-201ENST00000216877 LINC01555Q8NAE3 123 aa12.99□□□□□ -0.33
PTPRA-201ENST00000216877 ZNF2Q9BSG1 426 aaPredicted RBP12.99□□□□□ -0.33
PTPRA-201ENST00000216877 OR2J1Q9GZK6 312 aa12.99□□□□□ -0.33
PTPRA-201ENST00000216877 PCBD2Q9H0N5 130 aa12.99□□□□□ -0.33
PTPRA-201ENST00000216877 MAGT1Q9H0U3 335 aa12.99□□□□□ -0.33
PTPRA-201ENST00000216877 APOBEC3BQ9UH17 382 aaKnown RBP12.99□□□□□ -0.33
PTPRA-201ENST00000216877 A0A1W2PNV4 684 aa12.99□□□□□ -0.33
PTPRA-201ENST00000216877 FAM24AA6NFZ4 105 aa12.99□□□□□ -0.33
PTPRA-201ENST00000216877 SOCS1O15524 211 aa12.99□□□□□ -0.33
PTPRA-201ENST00000216877 SLC17A1Q14916 467 aa12.99□□□□□ -0.33
PTPRA-201ENST00000216877 TMEM176BQ3YBM2 270 aaPredicted RBP12.99□□□□□ -0.33
PTPRA-201ENST00000216877 LHX8Q68G74 356 aa12.99□□□□□ -0.33
PTPRA-201ENST00000216877 SLC18B1Q6NT16 456 aa12.99□□□□□ -0.33
PTPRA-201ENST00000216877 SLC16A14Q7RTX9 510 aa12.99□□□□□ -0.33
PTPRA-201ENST00000216877 NAGKQ9UJ70 344 aa12.99□□□□□ -0.33
PTPRA-201ENST00000216877 SCN10AQ9Y5Y9 1956 aa12.99□□□□□ -0.33
PTPRA-201ENST00000216877 A0A1W2PP11 408 aa12.99□□□□□ -0.33
PTPRA-201ENST00000216877 SUPT4H1P63272 117 aaKnown RBP12.99□□□□□ -0.33
PTPRA-201ENST00000216877 SGCGQ13326 291 aa12.99□□□□□ -0.33
PTPRA-201ENST00000216877 Q6ZVH6 145 aa12.99□□□□□ -0.33
PTPRA-201ENST00000216877 CMTM1Q8IZ96 169 aa12.99□□□□□ -0.33
PTPRA-201ENST00000216877 SHISA5Q8N114 240 aa12.99□□□□□ -0.33
PTPRA-201ENST00000216877 ATG2BQ96BY7 2078 aa12.99□□□□□ -0.33
PTPRA-201ENST00000216877 PRSS47A8MTI9 375 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 E5RGE8 158 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 SOD2P04179 222 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 SLC25A1P53007 311 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 SPRED2Q7Z698 418 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 OR8D2Q9GZM6 311 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 PLEKHA2Q9HB19 425 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 NSG2Q9Y328 171 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 KIF26BQ2KJY2 2108 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 CEBPZOSA8MTT3 80 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 ONECUT2O95948 504 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 LCATP04180 440 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 CD55P08174 381 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 DCAF7P61962 342 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 KCTD18Q6PI47 426 aaPredicted RBP12.98□□□□□ -0.33
PTPRA-201ENST00000216877 RTL10Q7L3V2 364 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 NUP54Q7Z3B4 507 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 ZNF573Q86YE8 665 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 OR1N1Q8NGS0 311 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 SPHK2Q9NRA0 654 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 A0A0U1RQK1 487 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 DEDDO75618 318 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 LYPD3O95274 346 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 P2RY1P47900 373 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 FGF8P55075 233 aaPredicted RBP12.98□□□□□ -0.33
PTPRA-201ENST00000216877 PLAURQ03405 335 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 CEBPEQ15744 281 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 COL5A1-AS1Q5SY13 56 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 C1QL3Q5VWW1 255 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 OIT3Q8WWZ8 545 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 PCGF1Q9BSM1 259 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 EYSQ5T1H1 3165 aa12.98□□□□□ -0.33
PTPRA-201ENST00000216877 BRWD1Q9NSI6 2320 aa12.97□□□□□ -0.33
PTPRA-201ENST00000216877 A0A1B0GUS0 222 aa12.97□□□□□ -0.33
PTPRA-201ENST00000216877 HLA-HP01893 362 aa12.97□□□□□ -0.33
PTPRA-201ENST00000216877 ZNF20P17024 532 aa12.97□□□□□ -0.33
PTPRA-201ENST00000216877 EN2P19622 333 aaPredicted RBP12.97□□□□□ -0.33
PTPRA-201ENST00000216877 ATP6V0CP27449 155 aa12.97□□□□□ -0.33
PTPRA-201ENST00000216877 THBS4P35443 961 aa12.97□□□□□ -0.33
PTPRA-201ENST00000216877 SRSF5Q13243 272 aaKnown RBP12.97□□□□□ -0.33
PTPRA-201ENST00000216877 ZNF709Q8N972 641 aa12.97□□□□□ -0.33
PTPRA-201ENST00000216877 RPS4Y2Q8TD47 263 aa12.97□□□□□ -0.33
PTPRA-201ENST00000216877 AQP3Q92482 292 aa12.97□□□□□ -0.33
PTPRA-201ENST00000216877 RPUSD4Q96CM3 377 aaKnown RBP12.97□□□□□ -0.33
PTPRA-201ENST00000216877 ZNF681Q96N22 645 aa12.97□□□□□ -0.33
PTPRA-201ENST00000216877 TXN2Q99757 166 aa12.97□□□□□ -0.33
PTPRA-201ENST00000216877 MDC1Q14676 2089 aaKnown RBP12.97□□□□□ -0.33
PTPRA-201ENST00000216877 ZNF320A2RRD8 509 aa12.97□□□□□ -0.33
PTPRA-201ENST00000216877 ABHD16AO95870 558 aa12.97□□□□□ -0.33
PTPRA-201ENST00000216877 LY6G5CQ5SRR4 150 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms