RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	MRPS28	Q9Y2Q9	187 aa	Known RBP	10.09	□□□□□ -0.79
CLN6-223	ENST00000637823	NOP16	Q9Y3C1	178 aa	Known RBP	10.09	□□□□□ -0.79
CLN6-223	ENST00000637823	CHD6	Q8TD26	2715 aa		10.09	□□□□□ -0.79
CLN6-223	ENST00000637823	TMEM272	A0A1B0GTI8	110 aa		10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	PQLC2L	A1A4F0	135 aa		10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	LDLRAD4	O15165	306 aa		10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	CLDN14	O95500	239 aa		10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	PRB1	P04280	392 aa		10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	NAT2	P11245	290 aa		10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	RAB6A	P20340	208 aa		10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	OR3A4P	P47883	348 aa		10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	FABP6	P51161	128 aa		10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	DCTN2	Q13561	401 aa	Known RBP	10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	CDSN	Q15517	529 aa		10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	DMRTC1	Q5HYR2	192 aa		10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	AWAT2	Q6E213	333 aa		10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	CRIP3	Q6Q6R5	217 aa		10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	GLIPR1L1	Q6UWM5	242 aa		10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	BAIAP2L2	Q6UXY1	529 aa		10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	OR2W3	Q7Z3T1	314 aa		10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	BHLHE23	Q8NDY6	225 aa		10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	NUP37	Q8NFH4	326 aa		10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	OR8G5	Q8NG78	346 aa		10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	SYNPR	Q8TBG9	265 aa		10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	ITLN2	Q8WWU7	325 aa	Predicted RBP	10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	OR5P3	Q8WZ94	311 aa		10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	S100A13	Q99584	98 aa		10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	NKX3-1	Q99801	234 aa	Predicted RBP	10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	SLC22A4	Q9H015	551 aa		10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	ESRP2	Q9H6T0	727 aa	Known RBP	10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	TMEM100	Q9NV29	134 aa		10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	CRIM1	Q9NZV1	1036 aa		10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	EXTL2	Q9UBQ6	330 aa		10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	ING4	Q9UNL4	249 aa		10.08	□□□□□ -0.8
CLN6-223	ENST00000637823		V9GYH0	126 aa		10.08	□□□□□ -0.8
CLN6-223	ENST00000637823	IGKV1-27	A0A075B6S5	117 aa		10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	OR5B21	A6NL26	309 aa		10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	ATP6V1G2-DDX39B	F2Z307	99 aa		10.07	□□□□□ -0.8
CLN6-223	ENST00000637823		J3QRK9	145 aa		10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	TIMM8A	O60220	97 aa	Predicted RBP	10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	ZG16	O60844	167 aa		10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	LILRA1	O75019	489 aa		10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	TPPP	O94811	219 aa		10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	IGHV3-13	P01766	116 aa		10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	CA6	P23280	308 aa		10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	NR4A2	P43354	598 aa		10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	SELENOV	P59797	346 aa		10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	QRFP	P83859	136 aa		10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	BSPH1	Q075Z2	132 aa		10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	TFF3	Q07654	80 aa		10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	ALKBH6	Q3KRA9	238 aa		10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	NCMAP	Q5T1S8	102 aa		10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	ASCL4	Q6XD76	172 aa		10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	OR4M1	Q8NGD0	313 aa		10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	KCNG3	Q8TAE7	436 aa		10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	LINC01560	Q8TB33	94 aa		10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	TMEM171	Q8WVE6	324 aa		10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	TNFAIP8L1	Q8WVP5	186 aa		10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	RFT1	Q96AA3	541 aa		10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	ITPKC	Q96DU7	683 aa		10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	SLC25A38	Q96DW6	304 aa		10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	RNF170	Q96K19	258 aa		10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	C1orf147	Q96MC9	270 aa	Predicted RBP	10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	PALMD	Q9NP74	551 aa		10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	RHBDL2	Q9NX52	303 aa		10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	PLCE1	Q9P212	2302 aa		10.07	□□□□□ -0.8
CLN6-223	ENST00000637823	KIR2DP1	A0A0G2JNF4	349 aa	Predicted RBP	10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	TUBAL3	A6NHL2	446 aa		10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	TMEM14DP	A8MWL7	114 aa		10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	VSTM5	A8MXK1	200 aa		10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	ZNF732	B4DXR9	585 aa		10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	ABCD4	O14678	606 aa		10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	TMEM225B	P0DP42	221 aa		10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	VSIG8	P0DPA2	414 aa		10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	GRN	P28799	593 aa	Known RBP	10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	PITPNB	P48739	271 aa		10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	GPM6A	P51674	278 aa		10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	EFNB2	P52799	333 aa		10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	KLF3	P57682	345 aa	Predicted RBP	10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	ZP1	P60852	638 aa		10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	GNG3	P63215	75 aa		10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	PITPNA	Q00169	270 aa		10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	PDZK1IP1	Q13113	114 aa		10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	IL18	Q14116	193 aa		10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	GPR176	Q14439	515 aa		10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	FAM189A2	Q15884	450 aa		10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	PYDC2	Q56P42	97 aa		10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	C16orf87	Q6PH81	154 aa		10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	SLC22A25	Q6T423	547 aa		10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	SAXO1	Q8IYX7	474 aa		10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	GDPD1	Q8N9F7	314 aa		10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	SPERT	Q8NA61	448 aa		10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	ZSCAN4	Q8NAM6	433 aa	Predicted RBP	10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	PXT1	Q8NFP0	134 aa		10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	OR13G1	Q8NGZ3	307 aa		10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	C15orf40	Q8WUR7	153 aa		10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	HPSE2	Q8WWQ2	592 aa		10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	PHF21A	Q96BD5	680 aa		10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	MICU1	Q9BPX6	476 aa		10.06	□□□□□ -0.8
CLN6-223	ENST00000637823	RTL8A	Q9BWD3	113 aa		10.06	□□□□□ -0.8

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