RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 KCNG3Q8TAE7 436 aa14.51□□□□□ -0.09
CLN3-252ENST00000636907 FCAMRQ8WWV6 532 aa14.51□□□□□ -0.09
CLN3-252ENST00000636907 CPNE2Q96FN4 548 aaPredicted RBP14.51□□□□□ -0.09
CLN3-252ENST00000636907 CCDC120Q96HB5 630 aa14.51□□□□□ -0.09
CLN3-252ENST00000636907 BANF2Q9H503 90 aa14.51□□□□□ -0.09
CLN3-252ENST00000636907 GHRLQ9UBU3 117 aa14.51□□□□□ -0.09
CLN3-252ENST00000636907 RBMX2Q9Y388 322 aaKnown RBP14.51□□□□□ -0.09
CLN3-252ENST00000636907 MYO7BQ6PIF6 2116 aa14.51□□□□□ -0.09
CLN3-252ENST00000636907 IGHV1-18A0A0C4DH31 117 aa14.5□□□□□ -0.09
CLN3-252ENST00000636907 RAB27BO00194 218 aa14.5□□□□□ -0.09
CLN3-252ENST00000636907 CST4P01036 141 aa14.5□□□□□ -0.09
CLN3-252ENST00000636907 UCP2P55851 309 aa14.5□□□□□ -0.09
CLN3-252ENST00000636907 FAM27E3Q08E93 113 aa14.5□□□□□ -0.09
CLN3-252ENST00000636907 LY6DQ14210 128 aa14.5□□□□□ -0.09
CLN3-252ENST00000636907 DNM1P46Q6ZS02 220 aa14.5□□□□□ -0.09
CLN3-252ENST00000636907 MRGPRGQ86SM5 289 aa14.5□□□□□ -0.09
CLN3-252ENST00000636907 LIX1LQ8IVB5 337 aa14.5□□□□□ -0.09
CLN3-252ENST00000636907 TOMM5Q8N4H5 51 aa14.5□□□□□ -0.09
CLN3-252ENST00000636907 OR10K1Q8NGX5 313 aa14.5□□□□□ -0.09
CLN3-252ENST00000636907 OR2J1Q9GZK6 312 aa14.5□□□□□ -0.09
CLN3-252ENST00000636907 LPAR5Q9H1C0 372 aa14.5□□□□□ -0.09
CLN3-252ENST00000636907 A0A0A6YYD4 124 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 WIPF3A6NGB9 483 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 SPRY1O43609 319 aaPredicted RBP14.49□□□□□ -0.09
CLN3-252ENST00000636907 LILRA1O75019 489 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 CRTAPO75718 401 aaPredicted RBP14.49□□□□□ -0.09
CLN3-252ENST00000636907 KIR2DL3P43628 341 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 VEGFCP49767 419 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 ATP1B3P54709 279 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 GUCA2AQ02747 115 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 GPR176Q14439 515 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 OR2T2Q6IF00 324 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 MZT2BQ6NZ67 158 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 FBXW12Q6X9E4 464 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 ZDHHC23Q8IYP9 409 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 FTMTQ8N4E7 242 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 FAM169BQ8N8A8 192 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 RELL2Q8NC24 303 aaPredicted RBP14.49□□□□□ -0.09
CLN3-252ENST00000636907 BHLHE23Q8NDY6 225 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 SLC25A40Q8TBP6 338 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 CMBLQ96DG6 245 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 ITPKCQ96DU7 683 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 S100A13Q99584 98 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 NICN1Q9BSH3 213 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 TMEM59Q9BXS4 323 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 FGF23Q9GZV9 251 aaPredicted RBP14.49□□□□□ -0.09
CLN3-252ENST00000636907 RBFOX1Q9NWB1 397 aaKnown RBP14.49□□□□□ -0.09
CLN3-252ENST00000636907 KLK11Q9UBX7 282 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 CACNG2Q9Y698 323 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 PLATP00750 562 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 TMEM225BP0DP42 221 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 KLF9Q13886 244 aaPredicted RBP14.49□□□□□ -0.09
CLN3-252ENST00000636907 RAB12Q6IQ22 244 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 CELF2-AS1Q8N7Q2 184 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 ST6GALNAC3Q8NDV1 305 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 OR1J1Q8NGS3 322 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 ENKURQ8TC29 256 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 HPSE2Q8WWQ2 592 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 DVL3Q92997 716 aaPredicted RBP14.49□□□□□ -0.09
CLN3-252ENST00000636907 DMRTA2Q96SC8 542 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 ACTR6Q9GZN1 396 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 CST11Q9H112 138 aa14.49□□□□□ -0.09
CLN3-252ENST00000636907 ZMAT3Q9HA38 289 aaKnown RBP14.49□□□□□ -0.09
CLN3-252ENST00000636907 ELL3Q9HB65 397 aaPredicted RBP14.49□□□□□ -0.09
CLN3-252ENST00000636907 MRPL15Q9P015 296 aaKnown RBP14.49□□□□□ -0.09
CLN3-252ENST00000636907 RP1L1Q8IWN7 2480 aaPredicted RBP14.48□□□□□ -0.09
CLN3-252ENST00000636907 IGHV2OR16-5A0A0B4J2B6 119 aa14.48□□□□□ -0.09
CLN3-252ENST00000636907 TRGV8A0A0C4DH27 118 aa14.48□□□□□ -0.09
CLN3-252ENST00000636907 ANGPTL7O43827 346 aa14.48□□□□□ -0.09
CLN3-252ENST00000636907 SFTPCP11686 197 aa14.48□□□□□ -0.09
CLN3-252ENST00000636907 SERPINA2P20848 420 aa14.48□□□□□ -0.09
CLN3-252ENST00000636907 PRSS3P35030 304 aa14.48□□□□□ -0.09
CLN3-252ENST00000636907 ZNF83P51522 516 aa14.48□□□□□ -0.09
CLN3-252ENST00000636907 GLCCI1Q86VQ1 547 aa14.48□□□□□ -0.09
CLN3-252ENST00000636907 RNF170Q96K19 258 aa14.48□□□□□ -0.09
CLN3-252ENST00000636907 VKORC1Q9BQB6 163 aa14.48□□□□□ -0.09
CLN3-252ENST00000636907 MMP28Q9H239 520 aa14.48□□□□□ -0.09
CLN3-252ENST00000636907 JKAMPQ9P055 326 aa14.48□□□□□ -0.09
CLN3-252ENST00000636907 ELF5Q9UKW6 265 aaPredicted RBP14.48□□□□□ -0.09
CLN3-252ENST00000636907 PQLC2LA1A4F0 135 aa14.47□□□□□ -0.09
CLN3-252ENST00000636907 ANKRD30BLA7E2S9 258 aa14.47□□□□□ -0.09
CLN3-252ENST00000636907 SCGNO76038 276 aa14.47□□□□□ -0.09
CLN3-252ENST00000636907 MGMTP16455 207 aa14.47□□□□□ -0.09
CLN3-252ENST00000636907 CALCRP30988 508 aa14.47□□□□□ -0.09
CLN3-252ENST00000636907 RPS27AP62979 156 aaKnown RBP14.47□□□□□ -0.09
CLN3-252ENST00000636907 PPA1Q15181 289 aa14.47□□□□□ -0.09
CLN3-252ENST00000636907 CEACAM21Q3KPI0 293 aa14.47□□□□□ -0.09
CLN3-252ENST00000636907 ALKBH2Q6NS38 261 aa14.47□□□□□ -0.09
CLN3-252ENST00000636907 ASCL4Q6XD76 172 aa14.47□□□□□ -0.09
CLN3-252ENST00000636907 CDH24Q86UP0 819 aa14.47□□□□□ -0.09
CLN3-252ENST00000636907 CHST4Q8NCG5 386 aa14.47□□□□□ -0.09
CLN3-252ENST00000636907 STEAP2Q8NFT2 490 aa14.47□□□□□ -0.09
CLN3-252ENST00000636907 OR10R2Q8NGX6 335 aa14.47□□□□□ -0.09
CLN3-252ENST00000636907 AQP3Q92482 292 aa14.47□□□□□ -0.09
CLN3-252ENST00000636907 ZC3HAV1LQ96H79 300 aaKnown RBP14.47□□□□□ -0.09
CLN3-252ENST00000636907 NPAP1Q9NZP6 1156 aa14.47□□□□□ -0.09
CLN3-252ENST00000636907 MEMO1Q9Y316 297 aa14.47□□□□□ -0.09
CLN3-252ENST00000636907 FAM240BA0A1B0GVZ2 78 aa14.46□□□□□ -0.09
CLN3-252ENST00000636907 FUOMA2VDF0 154 aa14.46□□□□□ -0.09
CLN3-252ENST00000636907 MEIS3P1A6NDR6 274 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms