RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 DCTN5Q9BTE1 182 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 MMP27Q9H306 513 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 PAPOLBQ9NRJ5 636 aaKnown RBP15.17■□□□□ 0.02
CLN3-241ENST00000635861 HAO2Q9NYQ3 351 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 SMIM31A0A1B0GVY4 71 aa15.16■□□□□ 0.02
CLN3-241ENST00000635861 DPPA5A6NC42 116 aa15.16■□□□□ 0.02
CLN3-241ENST00000635861 BTBD17A6NE02 478 aa15.16■□□□□ 0.02
CLN3-241ENST00000635861 NKX6-3A6NJ46 265 aa15.16■□□□□ 0.02
CLN3-241ENST00000635861 FAM183AA6NL82 134 aa15.16■□□□□ 0.02
CLN3-241ENST00000635861 CASQ2O14958 399 aaPredicted RBP15.16■□□□□ 0.02
CLN3-241ENST00000635861 BAG2O95816 211 aa15.16■□□□□ 0.02
CLN3-241ENST00000635861 IGHV4-59P01825 116 aa15.16■□□□□ 0.02
CLN3-241ENST00000635861 EEF1B2P24534 225 aaKnown RBP15.16■□□□□ 0.02
CLN3-241ENST00000635861 POU4F2Q12837 409 aa15.16■□□□□ 0.02
CLN3-241ENST00000635861 KRT74Q7RTS7 529 aa15.16■□□□□ 0.02
CLN3-241ENST00000635861 PIP4P2Q8N4L2 257 aa15.16■□□□□ 0.02
CLN3-241ENST00000635861 PAPD5Q8NDF8 572 aaKnown RBP15.16■□□□□ 0.02
CLN3-241ENST00000635861 MED30Q96HR3 178 aa15.16■□□□□ 0.02
CLN3-241ENST00000635861 FEVQ99581 238 aa15.16■□□□□ 0.02
CLN3-241ENST00000635861 MED20Q9H944 212 aa15.16■□□□□ 0.02
CLN3-241ENST00000635861 PDP1Q9P0J1 537 aaPredicted RBP15.16■□□□□ 0.02
CLN3-241ENST00000635861 ZNRD1Q9P1U0 126 aa15.16■□□□□ 0.02
CLN3-241ENST00000635861 ZNF319Q9P2F9 582 aa15.16■□□□□ 0.02
CLN3-241ENST00000635861 ONECUT1Q9UBC0 465 aa15.16■□□□□ 0.02
CLN3-241ENST00000635861 DNAJB11Q9UBS4 358 aa15.16■□□□□ 0.02
CLN3-241ENST00000635861 PRR23D1E9PI22 279 aaPredicted RBP15.15■□□□□ 0.02
CLN3-241ENST00000635861 HMGN1P05114 100 aa15.15■□□□□ 0.02
CLN3-241ENST00000635861 PRR23D2P0DMB1 279 aaPredicted RBP15.15■□□□□ 0.02
CLN3-241ENST00000635861 PSMA6P60900 246 aaKnown RBP15.15■□□□□ 0.02
CLN3-241ENST00000635861 GFOD2Q3B7J2 385 aa15.15■□□□□ 0.02
CLN3-241ENST00000635861 SLC35D3Q5M8T2 416 aa15.15■□□□□ 0.02
CLN3-241ENST00000635861 IZUMO2Q6UXV1 221 aa15.15■□□□□ 0.02
CLN3-241ENST00000635861 ZNF788Q6ZQV5 615 aa15.15■□□□□ 0.02
CLN3-241ENST00000635861 FAM216BQ8N7L0 139 aa15.15■□□□□ 0.02
CLN3-241ENST00000635861 ZSCAN4Q8NAM6 433 aaPredicted RBP15.15■□□□□ 0.02
CLN3-241ENST00000635861 LINC01006Q8NI28 216 aa15.15■□□□□ 0.02
CLN3-241ENST00000635861 OR5P3Q8WZ94 311 aa15.15■□□□□ 0.02
CLN3-241ENST00000635861 OTULINQ96BN8 352 aa15.15■□□□□ 0.02
CLN3-241ENST00000635861 AMELYQ99218 206 aa15.15■□□□□ 0.02
CLN3-241ENST00000635861 H0YJX3 145 aa15.14■□□□□ 0.01
CLN3-241ENST00000635861 CST1P01037 141 aa15.14■□□□□ 0.01
CLN3-241ENST00000635861 CAV3P56539 151 aa15.14■□□□□ 0.01
CLN3-241ENST00000635861 PROK1P58294 105 aa15.14■□□□□ 0.01
CLN3-241ENST00000635861 PRDX4Q13162 271 aa15.14■□□□□ 0.01
CLN3-241ENST00000635861 NCR3LG1Q68D85 454 aa15.14■□□□□ 0.01
CLN3-241ENST00000635861 PKP2Q99959 881 aa15.14■□□□□ 0.01
CLN3-241ENST00000635861 OR51V1Q9H2C8 321 aa15.14■□□□□ 0.01
CLN3-241ENST00000635861 C16orf95Q9H693 158 aa15.14■□□□□ 0.01
CLN3-241ENST00000635861 BRD7Q9NPI1 651 aa15.14■□□□□ 0.01
CLN3-241ENST00000635861 VPREB3Q9UKI3 123 aa15.14■□□□□ 0.01
CLN3-241ENST00000635861 TET2Q6N021 2002 aaPredicted RBP15.13■□□□□ 0.01
CLN3-241ENST00000635861 A0A1B0GW55 424 aa15.13■□□□□ 0.01
CLN3-241ENST00000635861 ACOD1A6NK06 481 aa15.13■□□□□ 0.01
CLN3-241ENST00000635861 ZNF850A8MQ14 1090 aa15.13■□□□□ 0.01
CLN3-241ENST00000635861 M0R1W7 72 aa15.13■□□□□ 0.01
CLN3-241ENST00000635861 DUX4L2P0CJ85 424 aa15.13■□□□□ 0.01
CLN3-241ENST00000635861 DUX4L3P0CJ86 424 aa15.13■□□□□ 0.01
CLN3-241ENST00000635861 DUX4L4P0CJ87 422 aa15.13■□□□□ 0.01
CLN3-241ENST00000635861 DUX4L5P0CJ88 424 aa15.13■□□□□ 0.01
CLN3-241ENST00000635861 DUX4L6P0CJ89 424 aa15.13■□□□□ 0.01
CLN3-241ENST00000635861 DUX4L7P0CJ90 424 aa15.13■□□□□ 0.01
CLN3-241ENST00000635861 AMY2BP19961 511 aa15.13■□□□□ 0.01
CLN3-241ENST00000635861 SRSF4Q08170 494 aaKnown RBP15.13■□□□□ 0.01
CLN3-241ENST00000635861 ACSM1Q08AH1 577 aa15.13■□□□□ 0.01
CLN3-241ENST00000635861 DEGS2Q6QHC5 323 aa15.13■□□□□ 0.01
CLN3-241ENST00000635861 DUX4L9Q6RFH8 374 aaPredicted RBP15.13■□□□□ 0.01
CLN3-241ENST00000635861 ZDHHC23Q8IYP9 409 aa15.13■□□□□ 0.01
CLN3-241ENST00000635861 IQCF1Q8N6M8 205 aa15.13■□□□□ 0.01
CLN3-241ENST00000635861 OR5R1Q8NH85 324 aa15.13■□□□□ 0.01
CLN3-241ENST00000635861 THEM6Q8WUY1 208 aa15.13■□□□□ 0.01
CLN3-241ENST00000635861 HIST1H2AAQ96QV6 131 aa15.13■□□□□ 0.01
CLN3-241ENST00000635861 TEX12Q9BXU0 123 aa15.13■□□□□ 0.01
CLN3-241ENST00000635861 DUX4Q9UBX2 424 aa15.13■□□□□ 0.01
CLN3-241ENST00000635861 RAB26Q9ULW5 256 aa15.13■□□□□ 0.01
CLN3-241ENST00000635861 RNASEK-C17orf49H0YIS7 233 aa15.12■□□□□ 0.01
CLN3-241ENST00000635861 H3BNX3 289 aa15.12■□□□□ 0.01
CLN3-241ENST00000635861 SIGLEC5O15389 551 aa15.12■□□□□ 0.01
CLN3-241ENST00000635861 ATP6V1B1P15313 513 aa15.12■□□□□ 0.01
CLN3-241ENST00000635861 ACKR3P25106 362 aa15.12■□□□□ 0.01
CLN3-241ENST00000635861 TGFBR2P37173 567 aa15.12■□□□□ 0.01
CLN3-241ENST00000635861 IKZF1Q13422 519 aa15.12■□□□□ 0.01
CLN3-241ENST00000635861 TAF9Q16594 264 aa15.12■□□□□ 0.01
CLN3-241ENST00000635861 MIDNQ504T8 468 aa15.12■□□□□ 0.01
CLN3-241ENST00000635861 DHRS7BQ6IAN0 325 aaPredicted RBP15.12■□□□□ 0.01
CLN3-241ENST00000635861 PLBD1Q6P4A8 553 aa15.12■□□□□ 0.01
CLN3-241ENST00000635861 FGFRL1Q8N441 504 aa15.12■□□□□ 0.01
CLN3-241ENST00000635861 Q8N7P7 452 aa15.12■□□□□ 0.01
CLN3-241ENST00000635861 ANGPTL6Q8NI99 470 aa15.12■□□□□ 0.01
CLN3-241ENST00000635861 NRG4Q8WWG1 115 aa15.12■□□□□ 0.01
CLN3-241ENST00000635861 RNF170Q96K19 258 aa15.12■□□□□ 0.01
CLN3-241ENST00000635861 CHID1Q9BWS9 393 aa15.12■□□□□ 0.01
CLN3-241ENST00000635861 YIPF3Q9GZM5 350 aa15.12■□□□□ 0.01
CLN3-241ENST00000635861 METTL8Q9H825 291 aaKnown RBP15.12■□□□□ 0.01
CLN3-241ENST00000635861 ZNF556Q9HAH1 456 aa15.12■□□□□ 0.01
CLN3-241ENST00000635861 SIRT7Q9NRC8 400 aa15.12■□□□□ 0.01
CLN3-241ENST00000635861 SLC25A10Q9UBX3 287 aaPredicted RBP15.12■□□□□ 0.01
CLN3-241ENST00000635861 A0A0U1RQV5 110 aa15.11■□□□□ 0.01
CLN3-241ENST00000635861 NPFFO15130 113 aa15.11■□□□□ 0.01
CLN3-241ENST00000635861 TSPAN9O75954 239 aa15.11■□□□□ 0.01
CLN3-241ENST00000635861 ACAA1P09110 424 aaPredicted RBP15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms