RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 C11orf53Q8IXP5 236 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 DEFB108BQ8NET1 73 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 NRG4Q8WWG1 115 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 HPSE2Q8WWQ2 592 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 TLNRD1Q9H1K6 362 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 FRRS1LQ9P0K9 344 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 TRAV38-1A0A0B4J264 116 aa17.35■□□□□ 0.37
CLN3-240ENST00000631023 LGALS8O00214 317 aa17.35■□□□□ 0.37
CLN3-240ENST00000631023 LHBP01229 141 aa17.35■□□□□ 0.37
CLN3-240ENST00000631023 WNT2P09544 360 aa17.35■□□□□ 0.37
CLN3-240ENST00000631023 RPS2P15880 293 aaKnown RBP17.35■□□□□ 0.37
CLN3-240ENST00000631023 CFHR2P36980 270 aa17.35■□□□□ 0.37
CLN3-240ENST00000631023 MED21Q13503 144 aa17.35■□□□□ 0.37
CLN3-240ENST00000631023 CR1LQ2VPA4 569 aa17.35■□□□□ 0.37
CLN3-240ENST00000631023 ESCO2Q56NI9 601 aa17.35■□□□□ 0.37
CLN3-240ENST00000631023 FAM120AOSQ5T036 256 aa17.35■□□□□ 0.37
CLN3-240ENST00000631023 DCDC5Q6ZRR9 648 aa17.35■□□□□ 0.37
CLN3-240ENST00000631023 OOEPA6NGQ2 149 aa17.34■□□□□ 0.37
CLN3-240ENST00000631023 ZNF732B4DXR9 585 aa17.34■□□□□ 0.37
CLN3-240ENST00000631023 F5H0A9 414 aaPredicted RBP17.34■□□□□ 0.37
CLN3-240ENST00000631023 NDUFA2O43678 99 aa17.34■□□□□ 0.37
CLN3-240ENST00000631023 ISG15P05161 165 aa17.34■□□□□ 0.37
CLN3-240ENST00000631023 RPSAP08865 295 aaKnown RBP17.34■□□□□ 0.37
CLN3-240ENST00000631023 MYL12AP19105 171 aa17.34■□□□□ 0.37
CLN3-240ENST00000631023 KIR3DL2P43630 455 aa17.34■□□□□ 0.37
CLN3-240ENST00000631023 GBX2P52951 348 aaPredicted RBP17.34■□□□□ 0.37
CLN3-240ENST00000631023 CSNK2BP67870 215 aa17.34■□□□□ 0.37
CLN3-240ENST00000631023 ALKBH1Q13686 389 aaKnown RBP17.34■□□□□ 0.37
CLN3-240ENST00000631023 TMEM42Q69YG0 159 aa17.34■□□□□ 0.37
CLN3-240ENST00000631023 SFRP4Q6FHJ7 346 aaPredicted RBP17.34■□□□□ 0.37
CLN3-240ENST00000631023 WDR82Q6UXN9 313 aa17.34■□□□□ 0.37
CLN3-240ENST00000631023 GCSAMQ8N6F7 178 aa17.34■□□□□ 0.37
CLN3-240ENST00000631023 SCCPDHQ8NBX0 429 aa17.34■□□□□ 0.37
CLN3-240ENST00000631023 LRRC29Q8WV35 223 aa17.34■□□□□ 0.37
CLN3-240ENST00000631023 RPL3LQ92901 407 aaKnown RBP17.34■□□□□ 0.37
CLN3-240ENST00000631023 RNF166Q96A37 237 aaPredicted RBP17.34■□□□□ 0.37
CLN3-240ENST00000631023 C10orf35Q96D05 121 aa17.34■□□□□ 0.37
CLN3-240ENST00000631023 ZNF649Q9BS31 505 aa17.34■□□□□ 0.37
CLN3-240ENST00000631023 ISG20L2Q9H9L3 353 aaKnown RBP17.34■□□□□ 0.37
CLN3-240ENST00000631023 CHCHD3Q9NX63 227 aaKnown RBP17.34■□□□□ 0.37
CLN3-240ENST00000631023 LRCH1Q9Y2L9 728 aa17.34■□□□□ 0.37
CLN3-240ENST00000631023 LOC107986453A0A1B0GWG9 222 aa17.33■□□□□ 0.37
CLN3-240ENST00000631023 C3orf80F5H4A9 247 aa17.33■□□□□ 0.37
CLN3-240ENST00000631023 H3BSH0 61 aa17.33■□□□□ 0.37
CLN3-240ENST00000631023 SERPINA3P01011 423 aa17.33■□□□□ 0.37
CLN3-240ENST00000631023 NANOS3P60323 173 aaKnown RBP17.33■□□□□ 0.37
CLN3-240ENST00000631023 LCN2P80188 198 aa17.33■□□□□ 0.37
CLN3-240ENST00000631023 TMPRSS11AQ6ZMR5 421 aa17.33■□□□□ 0.37
CLN3-240ENST00000631023 RDH10Q8IZV5 341 aa17.33■□□□□ 0.37
CLN3-240ENST00000631023 C19orf18Q8NEA5 215 aa17.33■□□□□ 0.37
CLN3-240ENST00000631023 OR8B3Q8NGG8 313 aa17.33■□□□□ 0.37
CLN3-240ENST00000631023 OR10Z1Q8NGY1 313 aa17.33■□□□□ 0.37
CLN3-240ENST00000631023 NEIL1Q96FI4 390 aaPredicted RBP17.33■□□□□ 0.37
CLN3-240ENST00000631023 POM121Q96HA1 1249 aa17.33■□□□□ 0.37
CLN3-240ENST00000631023 OR8B2Q96RD0 313 aa17.33■□□□□ 0.37
CLN3-240ENST00000631023 METTL17Q9H7H0 456 aaPredicted RBP17.33■□□□□ 0.37
CLN3-240ENST00000631023 A0A0G2JMP0 313 aa17.32■□□□□ 0.36
CLN3-240ENST00000631023 A0A0X1KG70 313 aa17.32■□□□□ 0.36
CLN3-240ENST00000631023 EFCAB10A6NFE3 127 aa17.32■□□□□ 0.36
CLN3-240ENST00000631023 A6NIN4 97 aa17.32■□□□□ 0.36
CLN3-240ENST00000631023 LIMS3P0CW19 117 aa17.32■□□□□ 0.36
CLN3-240ENST00000631023 LIMS4P0CW20 117 aa17.32■□□□□ 0.36
CLN3-240ENST00000631023 GATA3P23771 443 aa17.32■□□□□ 0.36
CLN3-240ENST00000631023 CD80P33681 288 aa17.32■□□□□ 0.36
CLN3-240ENST00000631023 AQP4P55087 323 aa17.32■□□□□ 0.36
CLN3-240ENST00000631023 RIPK1Q13546 671 aa17.32■□□□□ 0.36
CLN3-240ENST00000631023 MICBQ29980 383 aa17.32■□□□□ 0.36
CLN3-240ENST00000631023 FAHD2BQ6P2I3 314 aaPredicted RBP17.32■□□□□ 0.36
CLN3-240ENST00000631023 OR4M2Q8NGB6 313 aa17.32■□□□□ 0.36
CLN3-240ENST00000631023 FBLIM1Q8WUP2 373 aa17.32■□□□□ 0.36
CLN3-240ENST00000631023 FAHD2AQ96GK7 314 aa17.32■□□□□ 0.36
CLN3-240ENST00000631023 TMEM80Q96HE8 168 aa17.32■□□□□ 0.36
CLN3-240ENST00000631023 TECTBQ96PL2 329 aa17.32■□□□□ 0.36
CLN3-240ENST00000631023 SSBP3Q9BWW4 388 aaPredicted RBP17.32■□□□□ 0.36
CLN3-240ENST00000631023 FGF23Q9GZV9 251 aaPredicted RBP17.32■□□□□ 0.36
CLN3-240ENST00000631023 OR51I2Q9H344 312 aa17.32■□□□□ 0.36
CLN3-240ENST00000631023 GPR173Q9NS66 373 aa17.32■□□□□ 0.36
CLN3-240ENST00000631023 DIMT1Q9UNQ2 313 aaKnown RBP17.32■□□□□ 0.36
CLN3-240ENST00000631023 CAB39Q9Y376 341 aaPredicted RBP17.32■□□□□ 0.36
CLN3-240ENST00000631023 EXOSC1Q9Y3B2 195 aaKnown RBP17.32■□□□□ 0.36
CLN3-240ENST00000631023 ANK3Q12955 4377 aaKnown RBP17.32■□□□□ 0.36
CLN3-240ENST00000631023 ANKRD61A6NGH8 418 aa17.32■□□□□ 0.36
CLN3-240ENST00000631023 MUC1P15941 1255 aaPredicted RBP17.32■□□□□ 0.36
CLN3-240ENST00000631023 DCAF12L2Q5VW00 463 aa17.32■□□□□ 0.36
CLN3-240ENST00000631023 ZNF676Q8N7Q3 588 aa17.32■□□□□ 0.36
CLN3-240ENST00000631023 ZNF671Q8TAW3 534 aa17.32■□□□□ 0.36
CLN3-240ENST00000631023 PLCXD1Q9NUJ7 323 aa17.32■□□□□ 0.36
CLN3-240ENST00000631023 CNOT2Q9NZN8 540 aaKnown RBP17.32■□□□□ 0.36
CLN3-240ENST00000631023 HHLA2Q9UM44 414 aa17.32■□□□□ 0.36
CLN3-240ENST00000631023 SLC7A11Q9UPY5 501 aa17.32■□□□□ 0.36
CLN3-240ENST00000631023 PPIAL4CA0A0B4J2A2 164 aa17.31■□□□□ 0.36
CLN3-240ENST00000631023 OR4C45A6NMZ5 311 aa17.31■□□□□ 0.36
CLN3-240ENST00000631023 GATBO75879 557 aaKnown RBP17.31■□□□□ 0.36
CLN3-240ENST00000631023 CCDC159P0C7I6 412 aa17.31■□□□□ 0.36
CLN3-240ENST00000631023 PIPP12273 146 aaPredicted RBP17.31■□□□□ 0.36
CLN3-240ENST00000631023 ZFP36P26651 326 aaKnown RBP17.31■□□□□ 0.36
CLN3-240ENST00000631023 ETV1P50549 477 aa17.31■□□□□ 0.36
CLN3-240ENST00000631023 GNB2P62879 340 aa17.31■□□□□ 0.36
CLN3-240ENST00000631023 ST3GAL4Q11206 333 aa17.31■□□□□ 0.36
CLN3-240ENST00000631023 DMRTC1Q5HYR2 192 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms