RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 HEXAP06865 529 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 INSL4Q14641 139 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 PLCXD3Q63HM9 321 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 TMEM42Q69YG0 159 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 CRIP3Q6Q6R5 217 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 Q6ZSR3 168 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 KCTD8Q6ZWB6 473 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 ANGPTL5Q86XS5 388 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 SYS1Q8N2H4 156 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 CSNK2A3Q8NEV1 391 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 OR5T2Q8NGG2 359 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 OR5M11Q96RB7 305 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 GAL3ST1Q99999 423 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 TMEM246Q9BRR3 403 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 JAM3Q9BX67 310 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 RASSF4Q9H2L5 321 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 SNTG1Q9NSN8 517 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 PLCXD1Q9NUJ7 323 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 CEACAM18A8MTB9 384 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 F8VVB4 439 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 F8VWA3 439 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 PHF1O43189 567 aaPredicted RBP11.29□□□□□ -0.6
LINC00540-202ENST00000616974 TGFAP01135 160 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 SELLP14151 372 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 CFL1P23528 166 aaKnown RBP11.29□□□□□ -0.6
LINC00540-202ENST00000616974 GNALP38405 381 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 ACTA2P62736 377 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 ACTG2P63267 376 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 FDX2Q6P4F2 183 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 DOK3Q7L591 496 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 FAM90A1Q86YD7 464 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 FGGYQ96C11 551 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 ZNF665Q9H7R5 613 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 PCDHGB1Q9Y5G3 927 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 A0A1B0GVI7 797 aa11.28□□□□□ -0.6
LINC00540-202ENST00000616974 PLATP00750 562 aa11.28□□□□□ -0.6
LINC00540-202ENST00000616974 NRASP01111 189 aa11.28□□□□□ -0.6
LINC00540-202ENST00000616974 AMY2BP19961 511 aa11.28□□□□□ -0.6
LINC00540-202ENST00000616974 CHN2P52757 468 aa11.28□□□□□ -0.6
LINC00540-202ENST00000616974 LCN2P80188 198 aa11.28□□□□□ -0.6
LINC00540-202ENST00000616974 FAM76BQ5HYJ3 339 aa11.28□□□□□ -0.6
LINC00540-202ENST00000616974 LRRC28Q86X40 367 aaPredicted RBP11.28□□□□□ -0.6
LINC00540-202ENST00000616974 Q8TCH9 128 aa11.28□□□□□ -0.6
LINC00540-202ENST00000616974 LRRC29Q8WV35 223 aa11.28□□□□□ -0.6
LINC00540-202ENST00000616974 YAE1D1Q9NRH1 226 aa11.28□□□□□ -0.6
LINC00540-202ENST00000616974 CTSZQ9UBR2 303 aa11.28□□□□□ -0.6
LINC00540-202ENST00000616974 CD5LO43866 347 aa11.27□□□□□ -0.6
LINC00540-202ENST00000616974 LHBP01229 141 aa11.27□□□□□ -0.6
LINC00540-202ENST00000616974 PIPP12273 146 aaPredicted RBP11.27□□□□□ -0.6
LINC00540-202ENST00000616974 SOX2P48431 317 aa11.27□□□□□ -0.6
LINC00540-202ENST00000616974 SLC35A2P78381 396 aa11.27□□□□□ -0.6
LINC00540-202ENST00000616974 SLC3A1Q07837 685 aa11.27□□□□□ -0.6
LINC00540-202ENST00000616974 CDK5R1Q15078 307 aa11.27□□□□□ -0.6
LINC00540-202ENST00000616974 HAGHLQ6PII5 290 aaPredicted RBP11.27□□□□□ -0.6
LINC00540-202ENST00000616974 KRT74Q7RTS7 529 aa11.27□□□□□ -0.6
LINC00540-202ENST00000616974 STX19Q8N4C7 294 aa11.27□□□□□ -0.6
LINC00540-202ENST00000616974 CELF2-AS1Q8N7Q2 184 aa11.27□□□□□ -0.6
LINC00540-202ENST00000616974 ZNF676Q8N7Q3 588 aa11.27□□□□□ -0.6
LINC00540-202ENST00000616974 RFT1Q96AA3 541 aa11.27□□□□□ -0.6
LINC00540-202ENST00000616974 TLNRD1Q9H1K6 362 aa11.27□□□□□ -0.6
LINC00540-202ENST00000616974 OR51I2Q9H344 312 aa11.27□□□□□ -0.6
LINC00540-202ENST00000616974 SMURF1Q9HCE7 757 aa11.27□□□□□ -0.6
LINC00540-202ENST00000616974 MMP26Q9NRE1 261 aa11.27□□□□□ -0.6
LINC00540-202ENST00000616974 INPP5EQ9NRR6 644 aa11.27□□□□□ -0.6
LINC00540-202ENST00000616974 ENPP5Q9UJA9 477 aa11.27□□□□□ -0.6
LINC00540-202ENST00000616974 ZNF391Q9UJN7 358 aa11.27□□□□□ -0.6
LINC00540-202ENST00000616974 MPC1Q9Y5U8 109 aa11.27□□□□□ -0.6
LINC00540-202ENST00000616974 DNHD1Q96M86 4753 aa11.27□□□□□ -0.61
LINC00540-202ENST00000616974 TRBV2A0A0J9YWF9 115 aa11.27□□□□□ -0.61
LINC00540-202ENST00000616974 MAGEA13PA6NCF6 341 aa11.27□□□□□ -0.61
LINC00540-202ENST00000616974 ANXA2P2A6NMY6 339 aa11.27□□□□□ -0.61
LINC00540-202ENST00000616974 AVPP01185 164 aa11.27□□□□□ -0.61
LINC00540-202ENST00000616974 GYPAP02724 150 aa11.27□□□□□ -0.61
LINC00540-202ENST00000616974 MT-ND2P03891 347 aa11.27□□□□□ -0.61
LINC00540-202ENST00000616974 CDK1P06493 297 aa11.27□□□□□ -0.61
LINC00540-202ENST00000616974 MAP2K4P45985 399 aa11.27□□□□□ -0.61
LINC00540-202ENST00000616974 RPS11P62280 158 aaKnown RBP eCLIP11.27□□□□□ -0.61
LINC00540-202ENST00000616974 CEACAM21Q3KPI0 293 aa11.27□□□□□ -0.61
LINC00540-202ENST00000616974 KLHL36Q8N4N3 616 aa11.27□□□□□ -0.61
LINC00540-202ENST00000616974 OR51A2Q8NGJ7 313 aa11.27□□□□□ -0.61
LINC00540-202ENST00000616974 RPS4Y2Q8TD47 263 aa11.27□□□□□ -0.61
LINC00540-202ENST00000616974 RAB1CQ92928 201 aa11.27□□□□□ -0.61
LINC00540-202ENST00000616974 PGLYRP3Q96LB9 341 aa11.27□□□□□ -0.61
LINC00540-202ENST00000616974 ZNF184Q99676 751 aaPredicted RBP11.27□□□□□ -0.61
LINC00540-202ENST00000616974 SLC22A4Q9H015 551 aa11.27□□□□□ -0.61
LINC00540-202ENST00000616974 FN3KRPQ9HA64 309 aa11.27□□□□□ -0.61
LINC00540-202ENST00000616974 RNF7Q9UBF6 113 aa11.27□□□□□ -0.61
LINC00540-202ENST00000616974 CAB39Q9Y376 341 aaPredicted RBP11.27□□□□□ -0.61
LINC00540-202ENST00000616974 FAM230AA0A1W2PPH8 454 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 PLPP2O43688 288 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 UBCP0CG48 685 aaKnown RBP11.26□□□□□ -0.61
LINC00540-202ENST00000616974 CALCBP10092 127 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 CRHBPP24387 322 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 HAAOP46952 286 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 CDH15P55291 814 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 ZNF404Q494X3 552 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 CLVS2Q5SYC1 327 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 C1orf229Q6ZS94 237 aaPredicted RBP11.26□□□□□ -0.61
LINC00540-202ENST00000616974 KCTD20Q7Z5Y7 419 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 OR13C9Q8NGT0 318 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms