RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 C1orf174Q8IYL3 243 aa12.22□□□□□ -0.45
USP39-220ENST00000613444 FTMTQ8N4E7 242 aa12.22□□□□□ -0.45
USP39-220ENST00000613444 OR5D18Q8NGL1 313 aa12.22□□□□□ -0.45
USP39-220ENST00000613444 PRR7Q8TB68 274 aa12.22□□□□□ -0.45
USP39-220ENST00000613444 RNASE6Q93091 150 aaKnown RBP12.22□□□□□ -0.45
USP39-220ENST00000613444 ITPKCQ96DU7 683 aa12.22□□□□□ -0.45
USP39-220ENST00000613444 CCDC32Q9BV29 185 aa12.22□□□□□ -0.45
USP39-220ENST00000613444 MRPL15Q9P015 296 aaKnown RBP12.22□□□□□ -0.45
USP39-220ENST00000613444 ICE1Q9Y2F5 2266 aa12.21□□□□□ -0.45
USP39-220ENST00000613444 FAM230AA0A1W2PPH8 454 aa12.21□□□□□ -0.45
USP39-220ENST00000613444 PQLC2LA1A4F0 135 aa12.21□□□□□ -0.45
USP39-220ENST00000613444 TMEM14DPA8MWL7 114 aa12.21□□□□□ -0.45
USP39-220ENST00000613444 CTAG2O75638 210 aa12.21□□□□□ -0.45
USP39-220ENST00000613444 CRYAAP02489 173 aa12.21□□□□□ -0.45
USP39-220ENST00000613444 PPP3CBP16298 524 aa12.21□□□□□ -0.45
USP39-220ENST00000613444 GRNP28799 593 aaKnown RBP12.21□□□□□ -0.45
USP39-220ENST00000613444 PITPNBP48739 271 aa12.21□□□□□ -0.45
USP39-220ENST00000613444 RBP2P50120 134 aa12.21□□□□□ -0.45
USP39-220ENST00000613444 CAPZA1P52907 286 aa12.21□□□□□ -0.45
USP39-220ENST00000613444 CEACAM21Q3KPI0 293 aa12.21□□□□□ -0.45
USP39-220ENST00000613444 MBNL2Q5VZF2 373 aaKnown RBP12.21□□□□□ -0.45
USP39-220ENST00000613444 LHFPL2Q6ZUX7 228 aa12.21□□□□□ -0.45
USP39-220ENST00000613444 ZDHHC23Q8IYP9 409 aa12.21□□□□□ -0.45
USP39-220ENST00000613444 GDPD1Q8N9F7 314 aa12.21□□□□□ -0.45
USP39-220ENST00000613444 DVL3Q92997 716 aaPredicted RBP12.21□□□□□ -0.45
USP39-220ENST00000613444 ZC3HAV1LQ96H79 300 aaKnown RBP12.21□□□□□ -0.45
USP39-220ENST00000613444 GPER1Q99527 375 aa12.21□□□□□ -0.45
USP39-220ENST00000613444 DPRXA6NFQ7 191 aa12.2□□□□□ -0.46
USP39-220ENST00000613444 KDM4BO94953 1096 aa12.2□□□□□ -0.46
USP39-220ENST00000613444 RAB6AP20340 208 aa12.2□□□□□ -0.46
USP39-220ENST00000613444 CDK2P24941 298 aa12.2□□□□□ -0.46
USP39-220ENST00000613444 PTH2RP49190 550 aa12.2□□□□□ -0.46
USP39-220ENST00000613444 C4orf17Q53FE4 359 aa12.2□□□□□ -0.46
USP39-220ENST00000613444 WFDC8Q8IUA0 241 aa12.2□□□□□ -0.46
USP39-220ENST00000613444 IZUMO1Q8IYV9 350 aa12.2□□□□□ -0.46
USP39-220ENST00000613444 TMEM104Q8NE00 496 aa12.2□□□□□ -0.46
USP39-220ENST00000613444 OR5P3Q8WZ94 311 aa12.2□□□□□ -0.46
USP39-220ENST00000613444 BORCS8Q96FH0 119 aa12.2□□□□□ -0.46
USP39-220ENST00000613444 S100A16Q96FQ6 103 aaKnown RBP12.2□□□□□ -0.46
USP39-220ENST00000613444 C14orf119Q9NWQ9 140 aa12.2□□□□□ -0.46
USP39-220ENST00000613444 SLC7A11Q9UPY5 501 aa12.2□□□□□ -0.46
USP39-220ENST00000613444 MPC1Q9Y5U8 109 aa12.2□□□□□ -0.46
USP39-220ENST00000613444 ANKHD1Q8IWZ3 2542 aaKnown RBP12.2□□□□□ -0.46
USP39-220ENST00000613444 ANKRD30BLA7E2S9 258 aa12.2□□□□□ -0.46
USP39-220ENST00000613444 ATP6V1G2-DDX39BF2Z307 99 aa12.2□□□□□ -0.46
USP39-220ENST00000613444 HLA-DQB1P01920 261 aa12.2□□□□□ -0.46
USP39-220ENST00000613444 CSF3P09919 207 aa12.2□□□□□ -0.46
USP39-220ENST00000613444 KITLGP21583 273 aa12.2□□□□□ -0.46
USP39-220ENST00000613444 NR4A2P43354 598 aa12.2□□□□□ -0.46
USP39-220ENST00000613444 TFF3Q07654 80 aa12.2□□□□□ -0.46
USP39-220ENST00000613444 SNTB2Q13425 540 aaKnown RBP12.2□□□□□ -0.46
USP39-220ENST00000613444 PYDC2Q56P42 97 aa12.2□□□□□ -0.46
USP39-220ENST00000613444 STEAP3Q658P3 488 aa12.2□□□□□ -0.46
USP39-220ENST00000613444 PYHIN1Q6K0P9 492 aa12.2□□□□□ -0.46
USP39-220ENST00000613444 ASCL4Q6XD76 172 aa12.2□□□□□ -0.46
USP39-220ENST00000613444 LYSMD2Q8IV50 215 aa12.2□□□□□ -0.46
USP39-220ENST00000613444 PNLDC1Q8NA58 520 aaKnown RBP12.2□□□□□ -0.46
USP39-220ENST00000613444 TNFAIP8L1Q8WVP5 186 aa12.2□□□□□ -0.46
USP39-220ENST00000613444 ABCB10Q9NRK6 738 aa12.2□□□□□ -0.46
USP39-220ENST00000613444 PURGQ9UJV8 347 aaKnown RBP12.2□□□□□ -0.46
USP39-220ENST00000613444 A0A1W2PP11 408 aa12.19□□□□□ -0.46
USP39-220ENST00000613444 CA6P23280 308 aa12.19□□□□□ -0.46
USP39-220ENST00000613444 PTAFRP25105 342 aa12.19□□□□□ -0.46
USP39-220ENST00000613444 GLRXP35754 106 aa12.19□□□□□ -0.46
USP39-220ENST00000613444 MNDAP41218 407 aa12.19□□□□□ -0.46
USP39-220ENST00000613444 ZNF181Q2M3W8 571 aa12.19□□□□□ -0.46
USP39-220ENST00000613444 ZNF718Q3SXZ3 478 aa12.19□□□□□ -0.46
USP39-220ENST00000613444 TMEM108Q6UXF1 575 aa12.19□□□□□ -0.46
USP39-220ENST00000613444 OR2W3Q7Z3T1 314 aa12.19□□□□□ -0.46
USP39-220ENST00000613444 CALHM1Q8IU99 346 aa12.19□□□□□ -0.46
USP39-220ENST00000613444 OR5A2Q8NGI9 324 aa12.19□□□□□ -0.46
USP39-220ENST00000613444 CA5BP1Q8WTZ4 195 aa12.19□□□□□ -0.46
USP39-220ENST00000613444 TMEM171Q8WVE6 324 aa12.19□□□□□ -0.46
USP39-220ENST00000613444 NEK6Q9HC98 313 aa12.19□□□□□ -0.46
USP39-220ENST00000613444 GHRLQ9UBU3 117 aa12.19□□□□□ -0.46
USP39-220ENST00000613444 RAB22AQ9UL26 194 aa12.19□□□□□ -0.46
USP39-220ENST00000613444 FZR1Q9UM11 496 aa12.19□□□□□ -0.46
USP39-220ENST00000613444 ROS1P08922 2347 aa12.19□□□□□ -0.46
USP39-220ENST00000613444 IGKV1-12A0A0C4DH73 117 aa12.19□□□□□ -0.46
USP39-220ENST00000613444 XRCC3O43542 346 aa12.19□□□□□ -0.46
USP39-220ENST00000613444 IGKV1D-12P01611 117 aa12.19□□□□□ -0.46
USP39-220ENST00000613444 UBBP0CG47 229 aa12.19□□□□□ -0.46
USP39-220ENST00000613444 IL7P13232 177 aa12.19□□□□□ -0.46
USP39-220ENST00000613444 ZNF250P15622 560 aa12.19□□□□□ -0.46
USP39-220ENST00000613444 SELEP16581 610 aa12.19□□□□□ -0.46
USP39-220ENST00000613444 FABP6P51161 128 aa12.19□□□□□ -0.46
USP39-220ENST00000613444 ATP1B3P54709 279 aa12.19□□□□□ -0.46
USP39-220ENST00000613444 Q8N402 240 aa12.19□□□□□ -0.46
USP39-220ENST00000613444 FAM46BQ96A09 425 aa12.19□□□□□ -0.46
USP39-220ENST00000613444 A0A1B0GWJ7 208 aa12.18□□□□□ -0.46
USP39-220ENST00000613444 WIPF3A6NGB9 483 aa12.18□□□□□ -0.46
USP39-220ENST00000613444 PRB1P04280 392 aa12.18□□□□□ -0.46
USP39-220ENST00000613444 GPM6AP51674 278 aa12.18□□□□□ -0.46
USP39-220ENST00000613444 BSPH1Q075Z2 132 aa12.18□□□□□ -0.46
USP39-220ENST00000613444 PDZK1IP1Q13113 114 aa12.18□□□□□ -0.46
USP39-220ENST00000613444 SNTB1Q13884 538 aaKnown RBP12.18□□□□□ -0.46
USP39-220ENST00000613444 MOGAT2Q3SYC2 334 aa12.18□□□□□ -0.46
USP39-220ENST00000613444 RGS7BPQ6MZT1 257 aaPredicted RBP12.18□□□□□ -0.46
USP39-220ENST00000613444 MTFR2Q6P444 385 aa12.18□□□□□ -0.46
USP39-220ENST00000613444 BAIAP2L2Q6UXY1 529 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms