RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 MPIG6BO95866 241 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 GASTP01350 101 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 GYPBP06028 91 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 SPARCP09486 303 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 NDUFB7P17568 137 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 SPI1P17947 270 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 FMO3P31513 532 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 MSX2P35548 267 aaPredicted RBP4.92□□□□□ -1.62
VRK3-220ENST00000600259 OPRL1P41146 370 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 CX3CR1P49238 355 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 ZNF121P58317 390 aaPredicted RBP4.92□□□□□ -1.62
VRK3-220ENST00000600259 SMIM11AP58511 58 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 PSME3P61289 254 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 BLCAPP62952 87 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 GRB2P62993 217 aaKnown RBP4.92□□□□□ -1.62
VRK3-220ENST00000600259 IL5RAQ01344 420 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 PRDX4Q13162 271 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 CRMP1Q14194 572 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 TIGD6Q17RP2 521 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 ZBTB37Q5TC79 503 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 LIAT1Q6ZQX7 453 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 FAM57BQ71RH2 274 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 CD177Q8N6Q3 437 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 DTX3Q8N9I9 347 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 CSNK2A3Q8NEV1 391 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 PROKR2Q8NFJ6 384 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 OR4F17Q8NGA8 305 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 OR52H1Q8NGJ2 320 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 OR4C15Q8NGM1 316 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 OR4Q3Q8NH05 313 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 RNF170Q96K19 258 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 CLPTM1LQ96KA5 538 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 OR4F4Q96R69 305 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 MICU1Q9BPX6 476 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 KCTD14Q9BQ13 255 aaPredicted RBP4.92□□□□□ -1.62
VRK3-220ENST00000600259 BTBD10Q9BSF8 475 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 NSRP1Q9H0G5 558 aaKnown RBP4.92□□□□□ -1.62
VRK3-220ENST00000600259 YY1AP1Q9H869 796 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 HEXA-AS1Q9H8Q6 139 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 EFCAB1Q9HAE3 211 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 RAB18Q9NP72 206 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 KRCC1Q9NPI7 259 aaPredicted RBP4.92□□□□□ -1.62
VRK3-220ENST00000600259 NLKQ9UBE8 527 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 SAMD4AQ9UPU9 718 aaKnown RBP4.92□□□□□ -1.62
VRK3-220ENST00000600259 TCF19Q9Y242 345 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 CDH10Q9Y6N8 788 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 STAB2Q8WWQ8 2551 aa4.92□□□□□ -1.62
VRK3-220ENST00000600259 A0A1W2PQ09 198 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 C17orf98A8MV24 154 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 FAM90A22PA8MWA6 464 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 ODF3BA8MYP8 253 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 H0YAE9 185 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 NDUFAB1O14561 156 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 ANXA2P07355 339 aaKnown RBP4.91□□□□□ -1.62
VRK3-220ENST00000600259 CCL3L1P16619 93 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 JUNBP17275 347 aaPredicted RBP4.91□□□□□ -1.62
VRK3-220ENST00000600259 GLRA1P23415 457 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 CFL1P23528 166 aaKnown RBP4.91□□□□□ -1.62
VRK3-220ENST00000600259 POU1F1P28069 291 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 RRM2P31350 389 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 SLC15A1P46059 708 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 GABRA2P47869 451 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 DYNLT3P51808 116 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 EGFEM1PQ0D2K5 195 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 BLMHQ13867 455 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 ZNF273Q14593 569 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 KRT72Q14CN4 511 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 CNN3Q15417 329 aaKnown RBP4.91□□□□□ -1.62
VRK3-220ENST00000600259 TAF13Q15543 124 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 RASSF6Q6ZTQ3 369 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 TIGD4Q8IY51 512 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 FAM185AQ8N0U4 392 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 LINC00471Q8N535 108 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 RNF148Q8N7C7 305 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 OR9Q2Q8NGE9 314 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 AQP3Q92482 292 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 PIGCQ92535 297 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 NKX3-1Q99801 234 aaPredicted RBP4.91□□□□□ -1.62
VRK3-220ENST00000600259 RTL8AQ9BWD3 113 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 PAPOLGQ9BWT3 736 aaKnown RBP4.91□□□□□ -1.62
VRK3-220ENST00000600259 TSSK6Q9BXA6 273 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 PRSS22Q9GZN4 317 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 OR10A2Q9H208 303 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 RGCCQ9H4X1 137 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 VIPAS39Q9H9C1 493 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 IL1RAPQ9NPH3 570 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.91□□□□□ -1.62
VRK3-220ENST00000600259 INPP5EQ9NRR6 644 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 DNAJC27Q9NZQ0 273 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 LRP12Q9Y561 859 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 LYVE1Q9Y5Y7 322 aa4.91□□□□□ -1.62
VRK3-220ENST00000600259 DYNC2H1Q8NCM8 4307 aaKnown RBP4.91□□□□□ -1.62
VRK3-220ENST00000600259 TENM2Q9NT68 2774 aa4.9□□□□□ -1.62
VRK3-220ENST00000600259 RFPL4AA6NLU0 287 aa4.9□□□□□ -1.63
VRK3-220ENST00000600259 ANXA2P2A6NMY6 339 aa4.9□□□□□ -1.63
VRK3-220ENST00000600259 ZNF732B4DXR9 585 aa4.9□□□□□ -1.63
VRK3-220ENST00000600259 RFPL4AL1F8VTS6 287 aa4.9□□□□□ -1.63
VRK3-220ENST00000600259 NOS1APO75052 506 aaPredicted RBP4.9□□□□□ -1.63
VRK3-220ENST00000600259 SASH3O75995 380 aa4.9□□□□□ -1.63
VRK3-220ENST00000600259 IGLV3-1P01715 115 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms