RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 RAB18Q9NP72 206 aa18.29■□□□□ 0.52
UPF1-207ENST00000599848 A0A0B4J2E0 115 aa18.29■□□□□ 0.52
UPF1-207ENST00000599848 A0A1B0GX12 115 aa18.29■□□□□ 0.52
UPF1-207ENST00000599848 IFITM5A6NNB3 132 aa18.29■□□□□ 0.52
UPF1-207ENST00000599848 PPP5D1E7EU14 171 aa18.29■□□□□ 0.52
UPF1-207ENST00000599848 DGAT2L6Q6ZPD8 337 aa18.29■□□□□ 0.52
UPF1-207ENST00000599848 OR6X1Q8NH79 312 aa18.29■□□□□ 0.52
UPF1-207ENST00000599848 C10orf35Q96D05 121 aa18.29■□□□□ 0.52
UPF1-207ENST00000599848 CTNNBIP1Q9NSA3 81 aaPredicted RBP18.29■□□□□ 0.52
UPF1-207ENST00000599848 GLI3P10071 1580 aa18.29■□□□□ 0.52
UPF1-207ENST00000599848 SSSCA1O60232 199 aa18.29■□□□□ 0.52
UPF1-207ENST00000599848 CA6P23280 308 aa18.29■□□□□ 0.52
UPF1-207ENST00000599848 PXT1Q8NFP0 134 aa18.29■□□□□ 0.52
UPF1-207ENST00000599848 SLC25A46Q96AG3 418 aa18.29■□□□□ 0.52
UPF1-207ENST00000599848 ZNF665Q9H7R5 613 aa18.29■□□□□ 0.52
UPF1-207ENST00000599848 SIRT3Q9NTG7 399 aaPredicted RBP18.29■□□□□ 0.52
UPF1-207ENST00000599848 OR4S1Q8NGB4 309 aa18.28■□□□□ 0.52
UPF1-207ENST00000599848 C2orf50Q96LR7 162 aa18.28■□□□□ 0.52
UPF1-207ENST00000599848 PTDSS2Q9BVG9 487 aa18.28■□□□□ 0.52
UPF1-207ENST00000599848 OR51I2Q9H344 312 aa18.28■□□□□ 0.52
UPF1-207ENST00000599848 LRP3O75074 770 aa18.28■□□□□ 0.52
UPF1-207ENST00000599848 IGFBP1P08833 259 aaPredicted RBP18.28■□□□□ 0.52
UPF1-207ENST00000599848 JUNBP17275 347 aaPredicted RBP18.28■□□□□ 0.52
UPF1-207ENST00000599848 SPCS2Q15005 226 aa18.28■□□□□ 0.52
UPF1-207ENST00000599848 ZNF239Q16600 458 aaKnown RBP18.28■□□□□ 0.52
UPF1-207ENST00000599848 OR4S2Q8NH73 311 aa18.28■□□□□ 0.52
UPF1-207ENST00000599848 KTI12Q96EK9 354 aaPredicted RBP18.28■□□□□ 0.52
UPF1-207ENST00000599848 ARPC4-TTLL3A0A0A6YYG9 625 aa18.28■□□□□ 0.52
UPF1-207ENST00000599848 OPRK1P41145 380 aa18.28■□□□□ 0.52
UPF1-207ENST00000599848 SPRED3Q2MJR0 410 aa18.28■□□□□ 0.52
UPF1-207ENST00000599848 LRFN3Q9BTN0 628 aa18.28■□□□□ 0.52
UPF1-207ENST00000599848 FGF20Q9NP95 211 aaPredicted RBP18.28■□□□□ 0.52
UPF1-207ENST00000599848 TMEM235A6NFC5 223 aa18.28■□□□□ 0.52
UPF1-207ENST00000599848 B3GALNT1O75752 331 aa18.28■□□□□ 0.52
UPF1-207ENST00000599848 ZNF17P17021 662 aa18.28■□□□□ 0.52
UPF1-207ENST00000599848 NUBP1P53384 320 aa18.28■□□□□ 0.52
UPF1-207ENST00000599848 ZNF260Q3ZCT1 412 aa18.28■□□□□ 0.52
UPF1-207ENST00000599848 STAC2Q6ZMT1 411 aa18.28■□□□□ 0.52
UPF1-207ENST00000599848 WDR34Q96EX3 536 aa18.28■□□□□ 0.52
UPF1-207ENST00000599848 C20orf24Q9BUV8 137 aa18.28■□□□□ 0.52
UPF1-207ENST00000599848 FOXD3Q9UJU5 478 aaPredicted RBP18.28■□□□□ 0.52
UPF1-207ENST00000599848 SLC45A2Q9UMX9 530 aa18.28■□□□□ 0.52
UPF1-207ENST00000599848 ZNF724A8MTY0 619 aa18.27■□□□□ 0.52
UPF1-207ENST00000599848 FABP7O15540 132 aa18.27■□□□□ 0.52
UPF1-207ENST00000599848 PIGPP57054 158 aa18.27■□□□□ 0.52
UPF1-207ENST00000599848 PGA3P0DJD8 388 aa18.27■□□□□ 0.52
UPF1-207ENST00000599848 SHISA5Q8N114 240 aa18.27■□□□□ 0.52
UPF1-207ENST00000599848 CLN8Q9UBY8 286 aa18.27■□□□□ 0.52
UPF1-207ENST00000599848 USP54Q70EL1 1684 aa18.27■□□□□ 0.52
UPF1-207ENST00000599848 NHSL1Q5SYE7 1610 aa18.27■□□□□ 0.52
UPF1-207ENST00000599848 ID1P41134 155 aa18.27■□□□□ 0.52
UPF1-207ENST00000599848 COX14Q96I36 57 aa18.27■□□□□ 0.52
UPF1-207ENST00000599848 TRAV1-2A0A0B4J238 106 aa18.27■□□□□ 0.51
UPF1-207ENST00000599848 K7ESF4 209 aa18.27■□□□□ 0.51
UPF1-207ENST00000599848 PDGFBP01127 241 aaPredicted RBP18.27■□□□□ 0.51
UPF1-207ENST00000599848 ZNF141Q15928 474 aa18.27■□□□□ 0.51
UPF1-207ENST00000599848 OR13F1Q8NGS4 319 aa18.27■□□□□ 0.51
UPF1-207ENST00000599848 SERGEFQ9UGK8 458 aa18.27■□□□□ 0.51
UPF1-207ENST00000599848 OR6C68A6NDL8 312 aa18.26■□□□□ 0.51
UPF1-207ENST00000599848 SLC17A2O00624 439 aa18.26■□□□□ 0.51
UPF1-207ENST00000599848 SOX15O60248 233 aa18.26■□□□□ 0.51
UPF1-207ENST00000599848 EPPINO95925 133 aa18.26■□□□□ 0.51
UPF1-207ENST00000599848 FOSL1P15407 271 aa18.26■□□□□ 0.51
UPF1-207ENST00000599848 UBE2MP61081 183 aaKnown RBP18.26■□□□□ 0.51
UPF1-207ENST00000599848 MISP3Q96FF7 219 aa18.26■□□□□ 0.51
UPF1-207ENST00000599848 TMEM210A6NLX4 147 aa18.26■□□□□ 0.51
UPF1-207ENST00000599848 SCO1O75880 301 aa18.26■□□□□ 0.51
UPF1-207ENST00000599848 WDR31Q8NA23 367 aa18.26■□□□□ 0.51
UPF1-207ENST00000599848 OR2M7Q8NG81 312 aa18.26■□□□□ 0.51
UPF1-207ENST00000599848 SF3B6Q9Y3B4 125 aaKnown RBP18.26■□□□□ 0.51
UPF1-207ENST00000599848 GNG10P50151 68 aa18.26■□□□□ 0.51
UPF1-207ENST00000599848 CTDSP1Q9GZU7 261 aa18.26■□□□□ 0.51
UPF1-207ENST00000599848 ADAM10O14672 748 aa18.26■□□□□ 0.51
UPF1-207ENST00000599848 GZMHP20718 246 aa18.26■□□□□ 0.51
UPF1-207ENST00000599848 ZNF816Q0VGE8 651 aaPredicted RBP18.26■□□□□ 0.51
UPF1-207ENST00000599848 DGAT2L7PQ6IED9 249 aa18.26■□□□□ 0.51
UPF1-207ENST00000599848 FGF7P21781 194 aa18.25■□□□□ 0.51
UPF1-207ENST00000599848 PSMB6P28072 239 aa18.25■□□□□ 0.51
UPF1-207ENST00000599848 PTGFRP43088 359 aa18.25■□□□□ 0.51
UPF1-207ENST00000599848 RNF165Q6ZSG1 346 aa18.25■□□□□ 0.51
UPF1-207ENST00000599848 FAM122BQ7Z309 247 aa18.25■□□□□ 0.51
UPF1-207ENST00000599848 SLC22A13Q9Y226 551 aa18.25■□□□□ 0.51
UPF1-207ENST00000599848 SLC31A2O15432 143 aa18.25■□□□□ 0.51
UPF1-207ENST00000599848 SP1P08047 785 aa18.25■□□□□ 0.51
UPF1-207ENST00000599848 SCAND1P57086 179 aa18.25■□□□□ 0.51
UPF1-207ENST00000599848 LSM6P62312 80 aaKnown RBP18.25■□□□□ 0.51
UPF1-207ENST00000599848 MCHR2Q969V1 340 aa18.25■□□□□ 0.51
UPF1-207ENST00000599848 MARC2Q969Z3 335 aa18.25■□□□□ 0.51
UPF1-207ENST00000599848 RASL10BQ96S79 203 aa18.25■□□□□ 0.51
UPF1-207ENST00000599848 MYH4Q9Y623 1939 aa18.25■□□□□ 0.51
UPF1-207ENST00000599848 P2RY6Q15077 328 aa18.25■□□□□ 0.51
UPF1-207ENST00000599848 TMEM182Q6ZP80 229 aaPredicted RBP18.25■□□□□ 0.51
UPF1-207ENST00000599848 ZNF764Q96H86 408 aaPredicted RBP18.25■□□□□ 0.51
UPF1-207ENST00000599848 LSM2Q9Y333 95 aaKnown RBP18.25■□□□□ 0.51
UPF1-207ENST00000599848 LRP12Q9Y561 859 aa18.25■□□□□ 0.51
UPF1-207ENST00000599848 CST2P09228 141 aa18.25■□□□□ 0.51
UPF1-207ENST00000599848 ACOT7LQ6ZUV0 252 aa18.25■□□□□ 0.51
UPF1-207ENST00000599848 CXorf58Q96LI9 332 aa18.25■□□□□ 0.51
UPF1-207ENST00000599848 IAPPP10997 89 aa18.25■□□□□ 0.51
UPF1-207ENST00000599848 SRSF5Q13243 272 aaKnown RBP18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms