RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 ADAM5Q6NVV9 412 aa13.04□□□□□ -0.32
TRIM28-209ENST00000597423 ZSCAN4Q8NAM6 433 aaPredicted RBP13.04□□□□□ -0.32
TRIM28-209ENST00000597423 SSC4DQ8WTU2 575 aa13.04□□□□□ -0.32
TRIM28-209ENST00000597423 NPRL2Q8WTW4 380 aa13.04□□□□□ -0.32
TRIM28-209ENST00000597423 PIK3IP1Q96FE7 263 aa13.04□□□□□ -0.32
TRIM28-209ENST00000597423 CXXC4Q9H2H0 198 aa13.04□□□□□ -0.32
TRIM28-209ENST00000597423 TAAR3PQ9P1P4 343 aa13.04□□□□□ -0.32
TRIM28-209ENST00000597423 FBXO9Q9UK97 447 aaPredicted RBP13.04□□□□□ -0.32
TRIM28-209ENST00000597423 ING4Q9UNL4 249 aa13.04□□□□□ -0.32
TRIM28-209ENST00000597423 MRPS28Q9Y2Q9 187 aaKnown RBP13.04□□□□□ -0.32
TRIM28-209ENST00000597423 ZFYVE26Q68DK2 2539 aa13.03□□□□□ -0.32
TRIM28-209ENST00000597423 CFAP46Q8IYW2 2715 aa13.03□□□□□ -0.32
TRIM28-209ENST00000597423 PQLC2LA1A4F0 135 aa13.03□□□□□ -0.32
TRIM28-209ENST00000597423 TMEM210A6NLX4 147 aa13.03□□□□□ -0.32
TRIM28-209ENST00000597423 SHISA9B4DS77 424 aa13.03□□□□□ -0.32
TRIM28-209ENST00000597423 ZNF732B4DXR9 585 aa13.03□□□□□ -0.32
TRIM28-209ENST00000597423 CTDSP2O14595 271 aa13.03□□□□□ -0.32
TRIM28-209ENST00000597423 ZNF780AO75290 641 aaPredicted RBP13.03□□□□□ -0.32
TRIM28-209ENST00000597423 OR4A8P0C604 315 aa13.03□□□□□ -0.32
TRIM28-209ENST00000597423 TNFSF4P23510 183 aa13.03□□□□□ -0.32
TRIM28-209ENST00000597423 THBS2P35442 1172 aa13.03□□□□□ -0.32
TRIM28-209ENST00000597423 ART1P52961 327 aa13.03□□□□□ -0.32
TRIM28-209ENST00000597423 P2RY14Q15391 338 aa13.03□□□□□ -0.32
TRIM28-209ENST00000597423 NKPD1Q17RQ9 610 aa13.03□□□□□ -0.32
TRIM28-209ENST00000597423 C2orf76Q3KRA6 126 aa13.03□□□□□ -0.32
TRIM28-209ENST00000597423 SPANXN2Q5MJ10 180 aa13.03□□□□□ -0.32
TRIM28-209ENST00000597423 AWAT2Q6E213 333 aa13.03□□□□□ -0.32
TRIM28-209ENST00000597423 LYPD6Q86Y78 171 aa13.03□□□□□ -0.32
TRIM28-209ENST00000597423 MKXQ8IYA7 352 aa13.03□□□□□ -0.32
TRIM28-209ENST00000597423 SAMD12Q8N8I0 201 aa13.03□□□□□ -0.32
TRIM28-209ENST00000597423 TBC1D15Q8TC07 691 aa13.03□□□□□ -0.32
TRIM28-209ENST00000597423 TNFAIP8L1Q8WVP5 186 aa13.03□□□□□ -0.32
TRIM28-209ENST00000597423 PTX4Q96A99 478 aa13.03□□□□□ -0.32
TRIM28-209ENST00000597423 PHF21AQ96BD5 680 aa13.03□□□□□ -0.32
TRIM28-209ENST00000597423 ITPKCQ96DU7 683 aa13.03□□□□□ -0.32
TRIM28-209ENST00000597423 DIRC2Q96SL1 478 aa13.03□□□□□ -0.32
TRIM28-209ENST00000597423 SYT3Q9BQG1 590 aa13.03□□□□□ -0.32
TRIM28-209ENST00000597423 ADAT1Q9BUB4 502 aaKnown RBP13.03□□□□□ -0.32
TRIM28-209ENST00000597423 METTL9Q9H1A3 318 aa13.03□□□□□ -0.32
TRIM28-209ENST00000597423 CISD1Q9NZ45 108 aaKnown RBP13.03□□□□□ -0.32
TRIM28-209ENST00000597423 RAB22AQ9UL26 194 aa13.03□□□□□ -0.32
TRIM28-209ENST00000597423 ZDHHC8Q9ULC8 765 aa13.03□□□□□ -0.32
TRIM28-209ENST00000597423 DIDO1Q9BTC0 2240 aaKnown RBP13.03□□□□□ -0.32
TRIM28-209ENST00000597423 DEFB108AA8MXU0 73 aa13.02□□□□□ -0.33
TRIM28-209ENST00000597423 FAM25AB3EWG3 89 aa13.02□□□□□ -0.33
TRIM28-209ENST00000597423 FAM25CB3EWG5 89 aa13.02□□□□□ -0.33
TRIM28-209ENST00000597423 FAM25GB3EWG6 89 aa13.02□□□□□ -0.33
TRIM28-209ENST00000597423 J3QKU1 62 aa13.02□□□□□ -0.33
TRIM28-209ENST00000597423 APOA1P02647 267 aa13.02□□□□□ -0.33
TRIM28-209ENST00000597423 SNRPBP14678 240 aaKnown RBP13.02□□□□□ -0.33
TRIM28-209ENST00000597423 ALDH3B1P43353 468 aa13.02□□□□□ -0.33
TRIM28-209ENST00000597423 GPM6AP51674 278 aa13.02□□□□□ -0.33
TRIM28-209ENST00000597423 PDZK1IP1Q13113 114 aa13.02□□□□□ -0.33
TRIM28-209ENST00000597423 ADIPOQQ15848 244 aa13.02□□□□□ -0.33
TRIM28-209ENST00000597423 UBE2NLQ5JXB2 153 aa13.02□□□□□ -0.33
TRIM28-209ENST00000597423 GLIPR1L1Q6UWM5 242 aa13.02□□□□□ -0.33
TRIM28-209ENST00000597423 MEX3BQ6ZN04 569 aaKnown RBP13.02□□□□□ -0.33
TRIM28-209ENST00000597423 LRRC28Q86X40 367 aaPredicted RBP13.02□□□□□ -0.33
TRIM28-209ENST00000597423 SAXO1Q8IYX7 474 aa13.02□□□□□ -0.33
TRIM28-209ENST00000597423 OR51D1Q8NGF3 324 aa13.02□□□□□ -0.33
TRIM28-209ENST00000597423 OR4D6Q8NGJ1 314 aa13.02□□□□□ -0.33
TRIM28-209ENST00000597423 KCNG3Q8TAE7 436 aa13.02□□□□□ -0.33
TRIM28-209ENST00000597423 RAB40AQ8WXH6 277 aa13.02□□□□□ -0.33
TRIM28-209ENST00000597423 SLC25A28Q96A46 364 aa13.02□□□□□ -0.33
TRIM28-209ENST00000597423 S100A16Q96FQ6 103 aaKnown RBP13.02□□□□□ -0.33
TRIM28-209ENST00000597423 WDFY2Q96P53 400 aa13.02□□□□□ -0.33
TRIM28-209ENST00000597423 SPACA5Q96QH8 159 aa13.02□□□□□ -0.33
TRIM28-209ENST00000597423 DHRS9Q9BPW9 319 aa13.02□□□□□ -0.33
TRIM28-209ENST00000597423 SPOCK3Q9BQ16 436 aa13.02□□□□□ -0.33
TRIM28-209ENST00000597423 TMEM204Q9BSN7 226 aa13.02□□□□□ -0.33
TRIM28-209ENST00000597423 MRPL37Q9BZE1 423 aaKnown RBP13.02□□□□□ -0.33
TRIM28-209ENST00000597423 CST11Q9H112 138 aa13.02□□□□□ -0.33
TRIM28-209ENST00000597423 HMG20AQ9NP66 347 aa13.02□□□□□ -0.33
TRIM28-209ENST00000597423 RABL2AQ9UBK7 228 aaPredicted RBP13.02□□□□□ -0.33
TRIM28-209ENST00000597423 OR5V1Q9UGF6 321 aa13.02□□□□□ -0.33
TRIM28-209ENST00000597423 RABL2BQ9UNT1 228 aa13.02□□□□□ -0.33
TRIM28-209ENST00000597423 A0A1B0GWJ7 208 aa13.01□□□□□ -0.33
TRIM28-209ENST00000597423 METTL21EPA6NDL7 271 aa13.01□□□□□ -0.33
TRIM28-209ENST00000597423 B9A039 149 aa13.01□□□□□ -0.33
TRIM28-209ENST00000597423 E7EQL1 145 aa13.01□□□□□ -0.33
TRIM28-209ENST00000597423 HPGDSO60760 199 aa13.01□□□□□ -0.33
TRIM28-209ENST00000597423 LILRA1O75019 489 aa13.01□□□□□ -0.33
TRIM28-209ENST00000597423 KDM4BO94953 1096 aa13.01□□□□□ -0.33
TRIM28-209ENST00000597423 PAHP00439 452 aa13.01□□□□□ -0.33
TRIM28-209ENST00000597423 IGFBP2P18065 325 aa13.01□□□□□ -0.33
TRIM28-209ENST00000597423 RAB6AP20340 208 aa13.01□□□□□ -0.33
TRIM28-209ENST00000597423 TNFSF8P32971 234 aa13.01□□□□□ -0.33
TRIM28-209ENST00000597423 POU3F4P49335 361 aa13.01□□□□□ -0.33
TRIM28-209ENST00000597423 ZNF81P51508 661 aa13.01□□□□□ -0.33
TRIM28-209ENST00000597423 CLDN12P56749 244 aa13.01□□□□□ -0.33
TRIM28-209ENST00000597423 ZNF45Q02386 682 aa13.01□□□□□ -0.33
TRIM28-209ENST00000597423 RSU1Q15404 277 aa13.01□□□□□ -0.33
TRIM28-209ENST00000597423 ALKBH6Q3KRA9 238 aa13.01□□□□□ -0.33
TRIM28-209ENST00000597423 ZNF672Q499Z4 452 aaPredicted RBP13.01□□□□□ -0.33
TRIM28-209ENST00000597423 OR2W3Q7Z3T1 314 aa13.01□□□□□ -0.33
TRIM28-209ENST00000597423 LRP11Q86VZ4 500 aa13.01□□□□□ -0.33
TRIM28-209ENST00000597423 FBXL14Q8N1E6 418 aa13.01□□□□□ -0.33
TRIM28-209ENST00000597423 PXT1Q8NFP0 134 aa13.01□□□□□ -0.33
TRIM28-209ENST00000597423 OR2Z1Q8NG97 314 aa13.01□□□□□ -0.33
TRIM28-209ENST00000597423 LGALS14Q8TCE9 139 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms