RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 GYPAP02724 150 aa13.49□□□□□ -0.25
TRIM28-206ENST00000595974 CCL1P22362 96 aa13.49□□□□□ -0.25
TRIM28-206ENST00000595974 GPM6AP51674 278 aa13.49□□□□□ -0.25
TRIM28-206ENST00000595974 ISL1P61371 349 aa13.49□□□□□ -0.25
TRIM28-206ENST00000595974 ZNF85Q03923 595 aa13.49□□□□□ -0.25
TRIM28-206ENST00000595974 CD276Q5ZPR3 534 aa13.49□□□□□ -0.25
TRIM28-206ENST00000595974 PLCXD3Q63HM9 321 aa13.49□□□□□ -0.25
TRIM28-206ENST00000595974 Q6ZSR3 168 aa13.49□□□□□ -0.25
TRIM28-206ENST00000595974 DOK3Q7L591 496 aa13.49□□□□□ -0.25
TRIM28-206ENST00000595974 CATSPERDQ86XM0 798 aa13.49□□□□□ -0.25
TRIM28-206ENST00000595974 PHC2Q8IXK0 858 aa13.49□□□□□ -0.25
TRIM28-206ENST00000595974 SCCPDHQ8NBX0 429 aa13.49□□□□□ -0.25
TRIM28-206ENST00000595974 OR5A2Q8NGI9 324 aa13.49□□□□□ -0.25
TRIM28-206ENST00000595974 RPL3LQ92901 407 aaKnown RBP13.49□□□□□ -0.25
TRIM28-206ENST00000595974 RNFT2Q96EX2 444 aa13.49□□□□□ -0.25
TRIM28-206ENST00000595974 RDH12Q96NR8 316 aa13.49□□□□□ -0.25
TRIM28-206ENST00000595974 PCDHGB1Q9Y5G3 927 aa13.49□□□□□ -0.25
TRIM28-206ENST00000595974 IGHV3OR15-7A0A075B7D8 119 aa13.48□□□□□ -0.25
TRIM28-206ENST00000595974 A0A1B0GTI1 187 aa13.48□□□□□ -0.25
TRIM28-206ENST00000595974 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.48□□□□□ -0.25
TRIM28-206ENST00000595974 NRASP01111 189 aa13.48□□□□□ -0.25
TRIM28-206ENST00000595974 GABRB1P18505 474 aa13.48□□□□□ -0.25
TRIM28-206ENST00000595974 C11orf91Q3C1V1 193 aa13.48□□□□□ -0.25
TRIM28-206ENST00000595974 CEP78Q5JTW2 689 aa13.48□□□□□ -0.25
TRIM28-206ENST00000595974 CLVS2Q5SYC1 327 aa13.48□□□□□ -0.25
TRIM28-206ENST00000595974 TMEM42Q69YG0 159 aa13.48□□□□□ -0.25
TRIM28-206ENST00000595974 USP43Q70EL4 1123 aa13.48□□□□□ -0.25
TRIM28-206ENST00000595974 ENTHD1Q8IYW4 607 aa13.48□□□□□ -0.25
TRIM28-206ENST00000595974 CCDC54Q8NEL0 328 aa13.48□□□□□ -0.25
TRIM28-206ENST00000595974 RORBQ92753 470 aa13.48□□□□□ -0.25
TRIM28-206ENST00000595974 NUDT16L1Q9BRJ7 211 aaKnown RBP13.48□□□□□ -0.25
TRIM28-206ENST00000595974 SUCNR1Q9BXA5 334 aa13.48□□□□□ -0.25
TRIM28-206ENST00000595974 SMURF1Q9HCE7 757 aa13.48□□□□□ -0.25
TRIM28-206ENST00000595974 GNG8Q9UK08 70 aa13.48□□□□□ -0.25
TRIM28-206ENST00000595974 SLC22A13Q9Y226 551 aa13.48□□□□□ -0.25
TRIM28-206ENST00000595974 KIR2DS1A0A191URI9 304 aa13.47□□□□□ -0.25
TRIM28-206ENST00000595974 LOC100130705A0A1B0GUX0 176 aa13.47□□□□□ -0.25
TRIM28-206ENST00000595974 A0A1B0GVI7 797 aa13.47□□□□□ -0.25
TRIM28-206ENST00000595974 ZNF732B4DXR9 585 aa13.47□□□□□ -0.25
TRIM28-206ENST00000595974 C22orf46C9J442 243 aa13.47□□□□□ -0.25
TRIM28-206ENST00000595974 J3QRE1 110 aa13.47□□□□□ -0.25
TRIM28-206ENST00000595974 P2RY10O00398 339 aa13.47□□□□□ -0.25
TRIM28-206ENST00000595974 DLGAP1O14490 977 aa13.47□□□□□ -0.25
TRIM28-206ENST00000595974 TMPRSS2O15393 492 aa13.47□□□□□ -0.25
TRIM28-206ENST00000595974 SRSF2Q01130 221 aaKnown RBP13.47□□□□□ -0.25
TRIM28-206ENST00000595974 ZNF91Q05481 1191 aa13.47□□□□□ -0.25
TRIM28-206ENST00000595974 CDONQ4KMG0 1287 aa13.47□□□□□ -0.25
TRIM28-206ENST00000595974 WDR38Q5JTN6 314 aa13.47□□□□□ -0.25
TRIM28-206ENST00000595974 STUMQ69YW2 141 aa13.47□□□□□ -0.25
TRIM28-206ENST00000595974 MOB3CQ70IA8 216 aa13.47□□□□□ -0.25
TRIM28-206ENST00000595974 SLC36A1Q7Z2H8 476 aa13.47□□□□□ -0.25
TRIM28-206ENST00000595974 KCTD20Q7Z5Y7 419 aa13.47□□□□□ -0.25
TRIM28-206ENST00000595974 BPIFB2Q8N4F0 458 aa13.47□□□□□ -0.25
TRIM28-206ENST00000595974 OR14K1Q8NGZ2 314 aa13.47□□□□□ -0.25
TRIM28-206ENST00000595974 UPRTQ96BW1 309 aa13.47□□□□□ -0.25
TRIM28-206ENST00000595974 Q96MT0 163 aa13.47□□□□□ -0.25
TRIM28-206ENST00000595974 DNTTIP1Q9H147 329 aa13.47□□□□□ -0.25
TRIM28-206ENST00000595974 OR51I2Q9H344 312 aa13.47□□□□□ -0.25
TRIM28-206ENST00000595974 PLEKHA1Q9HB21 404 aa13.47□□□□□ -0.25
TRIM28-206ENST00000595974 ACOXLQ9NUZ1 547 aa13.47□□□□□ -0.25
TRIM28-206ENST00000595974 FAM118AQ9NWS6 357 aa13.47□□□□□ -0.25
TRIM28-206ENST00000595974 SMPD3Q9NY59 655 aaPredicted RBP13.47□□□□□ -0.25
TRIM28-206ENST00000595974 DNAJB11Q9UBS4 358 aa13.47□□□□□ -0.25
TRIM28-206ENST00000595974 NUP50Q9UKX7 468 aa13.47□□□□□ -0.25
TRIM28-206ENST00000595974 DAPL1A0PJW8 107 aa13.46□□□□□ -0.25
TRIM28-206ENST00000595974 SLC16A6O15403 523 aa13.46□□□□□ -0.25
TRIM28-206ENST00000595974 UBCP0CG48 685 aaKnown RBP13.46□□□□□ -0.25
TRIM28-206ENST00000595974 DBTP11182 482 aaKnown RBP13.46□□□□□ -0.25
TRIM28-206ENST00000595974 FPR2P25090 351 aa13.46□□□□□ -0.25
TRIM28-206ENST00000595974 HILS1P60008 231 aa13.46□□□□□ -0.25
TRIM28-206ENST00000595974 ACTA2P62736 377 aa13.46□□□□□ -0.25
TRIM28-206ENST00000595974 ACTG2P63267 376 aa13.46□□□□□ -0.25
TRIM28-206ENST00000595974 TP53I3Q53FA7 332 aa13.46□□□□□ -0.25
TRIM28-206ENST00000595974 KLF17Q5JT82 389 aaPredicted RBP13.46□□□□□ -0.25
TRIM28-206ENST00000595974 ACBD7Q8N6N7 88 aa13.46□□□□□ -0.25
TRIM28-206ENST00000595974 RHOXF1Q8NHV9 184 aa13.46□□□□□ -0.25
TRIM28-206ENST00000595974 MRPL48Q96GC5 212 aaKnown RBP13.46□□□□□ -0.25
TRIM28-206ENST00000595974 JMJD8Q96S16 334 aa13.46□□□□□ -0.25
TRIM28-206ENST00000595974 MYCBPQ99417 103 aaPredicted RBP13.46□□□□□ -0.25
TRIM28-206ENST00000595974 SLC6A7Q99884 636 aa13.46□□□□□ -0.25
TRIM28-206ENST00000595974 C19orf24Q9BVV8 132 aa13.46□□□□□ -0.25
TRIM28-206ENST00000595974 C8orf4Q9NR00 106 aa13.46□□□□□ -0.25
TRIM28-206ENST00000595974 EXOGQ9Y2C4 368 aaKnown RBP13.46□□□□□ -0.25
TRIM28-206ENST00000595974 LOC107986453A0A1B0GWG9 222 aa13.45□□□□□ -0.26
TRIM28-206ENST00000595974 NKX6-3A6NJ46 265 aa13.45□□□□□ -0.26
TRIM28-206ENST00000595974 DVL1O14640 695 aa13.45□□□□□ -0.26
TRIM28-206ENST00000595974 AKR7A2O43488 359 aa13.45□□□□□ -0.26
TRIM28-206ENST00000595974 SYT7O43581 403 aa13.45□□□□□ -0.26
TRIM28-206ENST00000595974 VENTXO95231 258 aa13.45□□□□□ -0.26
TRIM28-206ENST00000595974 ECDO95905 644 aaPredicted RBP13.45□□□□□ -0.26
TRIM28-206ENST00000595974 LIPFP07098 398 aa13.45□□□□□ -0.26
TRIM28-206ENST00000595974 ODF4Q2M2E3 257 aa13.45□□□□□ -0.26
TRIM28-206ENST00000595974 ATPAF1Q5TC12 328 aaPredicted RBP13.45□□□□□ -0.26
TRIM28-206ENST00000595974 ZNF573Q86YE8 665 aa13.45□□□□□ -0.26
TRIM28-206ENST00000595974 PNLDC1Q8NA58 520 aaKnown RBP13.45□□□□□ -0.26
TRIM28-206ENST00000595974 ZNF555Q8NEP9 628 aa13.45□□□□□ -0.26
TRIM28-206ENST00000595974 ZNF671Q8TAW3 534 aa13.45□□□□□ -0.26
TRIM28-206ENST00000595974 ZFAND2BQ8WV99 257 aa13.45□□□□□ -0.26
TRIM28-206ENST00000595974 AQP3Q92482 292 aa13.45□□□□□ -0.26
TRIM28-206ENST00000595974 LGALS12Q96DT0 336 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms