RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 IKZF2Q9UKS7 526 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 POLDIP2Q9Y2S7 368 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 CAB39Q9Y376 341 aaPredicted RBP8.73□□□□□ -1.01
LIG3-212ENST00000590181 KPTNQ9Y664 436 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 R4GMQ9 66 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 A0A1B0GUS0 222 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 A0A1B0GVI7 797 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 A0A1W2PPH5 198 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 NKX6-3A6NJ46 265 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 ZNF850A8MQ14 1090 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 TMPRSS2O15393 492 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 NDUFB3O43676 98 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 NOS1APO75052 506 aaPredicted RBP8.72□□□□□ -1.01
LIG3-212ENST00000590181 SERPINA3P01011 423 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 NRASP01111 189 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 ALPLP05186 524 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 PRTN3P24158 256 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 TGM4P49221 684 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 ALDH3A2P51648 485 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 CAV3P56539 151 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 SEC61A1P61619 476 aaKnown RBP8.72□□□□□ -1.01
LIG3-212ENST00000590181 SNRPGP62308 76 aaKnown RBP8.72□□□□□ -1.01
LIG3-212ENST00000590181 GUCA2AQ02747 115 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 DBPQ10586 325 aaPredicted RBP8.72□□□□□ -1.01
LIG3-212ENST00000590181 FOXL1Q12952 345 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 MRPL28Q13084 256 aaKnown RBP8.72□□□□□ -1.01
LIG3-212ENST00000590181 OCLNQ16625 522 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 GFOD2Q3B7J2 385 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 CLVS2Q5SYC1 327 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 ZNF684Q5T5D7 378 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 BCL2L15Q5TBC7 163 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 METTL11BQ5VVY1 283 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 METAP1DQ6UB28 335 aaPredicted RBP8.72□□□□□ -1.01
LIG3-212ENST00000590181 AMIGO2Q86SJ2 522 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 COMMD2Q86X83 199 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 SCCPDHQ8NBX0 429 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 Q96MT0 163 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 RDH12Q96NR8 316 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 SLC6A7Q99884 636 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 C9orf16Q9BUW7 83 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 ADI1Q9BV57 179 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 OR51I2Q9H344 312 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 CNTD2Q9H8S5 307 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 ZNF319Q9P2F9 582 aa8.72□□□□□ -1.01
LIG3-212ENST00000590181 METTL15A6NJ78 407 aa8.71□□□□□ -1.02
LIG3-212ENST00000590181 POM121CA8CG34 1229 aa8.71□□□□□ -1.02
LIG3-212ENST00000590181 C3orf80F5H4A9 247 aa8.71□□□□□ -1.02
LIG3-212ENST00000590181 DVL1O14640 695 aa8.71□□□□□ -1.02
LIG3-212ENST00000590181 CDIPTO14735 213 aa8.71□□□□□ -1.02
LIG3-212ENST00000590181 TOX4O94842 621 aa8.71□□□□□ -1.02
LIG3-212ENST00000590181 CCL1P22362 96 aa8.71□□□□□ -1.02
LIG3-212ENST00000590181 ACKR3P25106 362 aa8.71□□□□□ -1.02
LIG3-212ENST00000590181 IL13RA1P78552 427 aa8.71□□□□□ -1.02
LIG3-212ENST00000590181 DEFA6Q01524 100 aa8.71□□□□□ -1.02
LIG3-212ENST00000590181 SMIM21Q3B7S5 101 aa8.71□□□□□ -1.02
LIG3-212ENST00000590181 TMEM42Q69YG0 159 aa8.71□□□□□ -1.02
LIG3-212ENST00000590181 SFRP4Q6FHJ7 346 aaPredicted RBP8.71□□□□□ -1.02
LIG3-212ENST00000590181 LYPD2Q6UXB3 125 aa8.71□□□□□ -1.02
LIG3-212ENST00000590181 KCTD8Q6ZWB6 473 aa8.71□□□□□ -1.02
LIG3-212ENST00000590181 C8orf46Q8TAG6 207 aa8.71□□□□□ -1.02
LIG3-212ENST00000590181 OR51E1Q8TCB6 317 aa8.71□□□□□ -1.02
LIG3-212ENST00000590181 LYZL4Q96KX0 146 aa8.71□□□□□ -1.02
LIG3-212ENST00000590181 WDFY2Q96P53 400 aa8.71□□□□□ -1.02
LIG3-212ENST00000590181 ZNF696Q9H7X3 374 aa8.71□□□□□ -1.02
LIG3-212ENST00000590181 SEBOXQ9HB31 216 aaPredicted RBP8.71□□□□□ -1.02
LIG3-212ENST00000590181 NEK6Q9HC98 313 aa8.71□□□□□ -1.02
LIG3-212ENST00000590181 GPR84Q9NQS5 396 aa8.71□□□□□ -1.02
LIG3-212ENST00000590181 OR52A1Q9UKL2 312 aa8.71□□□□□ -1.02
LIG3-212ENST00000590181 POMT1Q9Y6A1 747 aa8.71□□□□□ -1.02
LIG3-212ENST00000590181 V9GYS6 101 aa8.71□□□□□ -1.02
LIG3-212ENST00000590181 TRBV23-1A0A0A0MS06 115 aa8.7□□□□□ -1.02
LIG3-212ENST00000590181 hCG_1809904A0A1W2PP81 198 aa8.7□□□□□ -1.02
LIG3-212ENST00000590181 A0A1W2PPE2 198 aa8.7□□□□□ -1.02
LIG3-212ENST00000590181 A0A1W2PR64 198 aa8.7□□□□□ -1.02
LIG3-212ENST00000590181 A0A1W2PRV1 198 aa8.7□□□□□ -1.02
LIG3-212ENST00000590181 C5orf63A6NC05 138 aa8.7□□□□□ -1.02
LIG3-212ENST00000590181 MITFO75030 526 aaPredicted RBP8.7□□□□□ -1.02
LIG3-212ENST00000590181 SRSF10O75494 262 aaKnown RBP8.7□□□□□ -1.02
LIG3-212ENST00000590181 GATBO75879 557 aaKnown RBP8.7□□□□□ -1.02
LIG3-212ENST00000590181 ZNF205O95201 554 aa8.7□□□□□ -1.02
LIG3-212ENST00000590181 TTRP02766 147 aa8.7□□□□□ -1.02
LIG3-212ENST00000590181 UBCP0CG48 685 aaKnown RBP8.7□□□□□ -1.02
LIG3-212ENST00000590181 GPM6AP51674 278 aa8.7□□□□□ -1.02
LIG3-212ENST00000590181 HCCSP53701 268 aa8.7□□□□□ -1.02
LIG3-212ENST00000590181 UBA52P62987 128 aaKnown RBP8.7□□□□□ -1.02
LIG3-212ENST00000590181 BAMBIQ13145 260 aa8.7□□□□□ -1.02
LIG3-212ENST00000590181 BLMHQ13867 455 aa8.7□□□□□ -1.02
LIG3-212ENST00000590181 CDONQ4KMG0 1287 aa8.7□□□□□ -1.02
LIG3-212ENST00000590181 MIDNQ504T8 468 aa8.7□□□□□ -1.02
LIG3-212ENST00000590181 KLF17Q5JT82 389 aaPredicted RBP8.7□□□□□ -1.02
LIG3-212ENST00000590181 FAM201AQ5SY85 155 aa8.7□□□□□ -1.02
LIG3-212ENST00000590181 TMEM244Q5VVB8 128 aa8.7□□□□□ -1.02
LIG3-212ENST00000590181 STUMQ69YW2 141 aa8.7□□□□□ -1.02
LIG3-212ENST00000590181 FDX2Q6P4F2 183 aa8.7□□□□□ -1.02
LIG3-212ENST00000590181 ZNF788Q6ZQV5 615 aa8.7□□□□□ -1.02
LIG3-212ENST00000590181 ZNF826PQ6ZT77 177 aa8.7□□□□□ -1.02
LIG3-212ENST00000590181 BTN2A1Q7KYR7 527 aa8.7□□□□□ -1.02
LIG3-212ENST00000590181 FAM220AQ7Z4H9 259 aa8.7□□□□□ -1.02
LIG3-212ENST00000590181 YIPF7Q8N8F6 280 aa8.7□□□□□ -1.02
LIG3-212ENST00000590181 DTX3Q8N9I9 347 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms