RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 SSUH2Q9Y2M2 353 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 A0A0A6YYD4 124 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 FAM230AA0A1W2PPH8 454 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 ZNF503-AS2A6NEH8 195 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 SERPINE3A8MV23 424 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 MKRN2OSH3BPM6 223 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 CSTBP04080 98 aaKnown RBP12.29□□□□□ -0.44
LIG3-205ENST00000585941 GNB3P16520 340 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 MPZP25189 248 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 MRPL49Q13405 166 aaKnown RBP12.29□□□□□ -0.44
LIG3-205ENST00000585941 KCNJ8Q15842 424 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 ACSF3Q4G176 576 aaPredicted RBP12.29□□□□□ -0.44
LIG3-205ENST00000585941 RNASE10Q5GAN6 216 aaKnown RBP12.29□□□□□ -0.44
LIG3-205ENST00000585941 PLCXD3Q63HM9 321 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 NSUN5P2Q63ZY6 315 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 GLDNQ6ZMI3 551 aaPredicted RBP12.29□□□□□ -0.44
LIG3-205ENST00000585941 NOXA1Q86UR1 476 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 LIX1LQ8IVB5 337 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 PXT1Q8NFP0 134 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 OR5D18Q8NGL1 313 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 OR8S1Q8NH09 359 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 MRPS24Q96EL2 167 aaKnown RBP12.29□□□□□ -0.44
LIG3-205ENST00000585941 DOCK7Q96N67 2140 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 TAAR6Q96RI8 345 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 PRRT1Q99946 306 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 NICN1Q9BSH3 213 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 ELL3Q9HB65 397 aaPredicted RBP12.29□□□□□ -0.44
LIG3-205ENST00000585941 SLC2A8Q9NY64 477 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 IL36GQ9NZH8 169 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 MFNGO00587 321 aa12.28□□□□□ -0.44
LIG3-205ENST00000585941 SOCS1O15524 211 aa12.28□□□□□ -0.44
LIG3-205ENST00000585941 SSNA1O43805 119 aa12.28□□□□□ -0.44
LIG3-205ENST00000585941 CST4P01036 141 aa12.28□□□□□ -0.44
LIG3-205ENST00000585941 C1QBP02746 253 aa12.28□□□□□ -0.44
LIG3-205ENST00000585941 SERPINA2P20848 420 aa12.28□□□□□ -0.44
LIG3-205ENST00000585941 ERP29P30040 261 aaKnown RBP12.28□□□□□ -0.44
LIG3-205ENST00000585941 UBE2NP61088 152 aaKnown RBP12.28□□□□□ -0.44
LIG3-205ENST00000585941 GK2Q14410 553 aaPredicted RBP12.28□□□□□ -0.44
LIG3-205ENST00000585941 RSU1Q15404 277 aa12.28□□□□□ -0.44
LIG3-205ENST00000585941 FCN2Q15485 313 aa12.28□□□□□ -0.44
LIG3-205ENST00000585941 ST3GAL2Q16842 350 aa12.28□□□□□ -0.44
LIG3-205ENST00000585941 RSPO4Q2I0M5 234 aaPredicted RBP12.28□□□□□ -0.44
LIG3-205ENST00000585941 HIKESHIQ53FT3 197 aa12.28□□□□□ -0.44
LIG3-205ENST00000585941 ACTBL2Q562R1 376 aa12.28□□□□□ -0.44
LIG3-205ENST00000585941 MOB3CQ70IA8 216 aa12.28□□□□□ -0.44
LIG3-205ENST00000585941 C1QL2Q7Z5L3 287 aa12.28□□□□□ -0.44
LIG3-205ENST00000585941 C1orf162Q8NEQ5 155 aaPredicted RBP12.28□□□□□ -0.44
LIG3-205ENST00000585941 OR4D10Q8NGI6 311 aa12.28□□□□□ -0.44
LIG3-205ENST00000585941 PIGCQ92535 297 aa12.28□□□□□ -0.44
LIG3-205ENST00000585941 DMRTB1Q96MA1 342 aa12.28□□□□□ -0.44
LIG3-205ENST00000585941 FYTTD1Q96QD9 318 aaKnown RBP12.28□□□□□ -0.44
LIG3-205ENST00000585941 ALX4Q9H161 411 aaPredicted RBP12.28□□□□□ -0.44
LIG3-205ENST00000585941 ANAPC10Q9UM13 185 aa12.28□□□□□ -0.44
LIG3-205ENST00000585941 FLVCR2Q9UPI3 526 aa12.28□□□□□ -0.44
LIG3-205ENST00000585941 FOXI3A8MTJ6 420 aaPredicted RBP12.27□□□□□ -0.45
LIG3-205ENST00000585941 CREBL2O60519 120 aaPredicted RBP12.27□□□□□ -0.45
LIG3-205ENST00000585941 AMY2AP04746 511 aa12.27□□□□□ -0.45
LIG3-205ENST00000585941 SULT1A3P0DMM9 295 aa12.27□□□□□ -0.45
LIG3-205ENST00000585941 SULT1A4P0DMN0 295 aa12.27□□□□□ -0.45
LIG3-205ENST00000585941 ANXA3P12429 323 aa12.27□□□□□ -0.45
LIG3-205ENST00000585941 NAT1P18440 290 aa12.27□□□□□ -0.45
LIG3-205ENST00000585941 PTGER4P35408 488 aa12.27□□□□□ -0.45
LIG3-205ENST00000585941 TMEM50BP56557 158 aa12.27□□□□□ -0.45
LIG3-205ENST00000585941 FOXC1Q12948 553 aa12.27□□□□□ -0.45
LIG3-205ENST00000585941 TBC1D28Q2M2D7 210 aa12.27□□□□□ -0.45
LIG3-205ENST00000585941 EIF2S3LQ2VIR3 472 aaKnown RBP12.27□□□□□ -0.45
LIG3-205ENST00000585941 PLAC9Q5JTB6 97 aa12.27□□□□□ -0.45
LIG3-205ENST00000585941 INO80CQ6PI98 192 aaPredicted RBP12.27□□□□□ -0.45
LIG3-205ENST00000585941 MDP1Q86V88 176 aa12.27□□□□□ -0.45
LIG3-205ENST00000585941 ZSCAN4Q8NAM6 433 aaPredicted RBP12.27□□□□□ -0.45
LIG3-205ENST00000585941 SLC30A7Q8NEW0 376 aa12.27□□□□□ -0.45
LIG3-205ENST00000585941 OR5M9Q8NGP3 310 aa12.27□□□□□ -0.45
LIG3-205ENST00000585941 CCDC107Q8WV48 283 aa12.27□□□□□ -0.45
LIG3-205ENST00000585941 NUDCD2Q8WVJ2 157 aa12.27□□□□□ -0.45
LIG3-205ENST00000585941 DVL3Q92997 716 aaPredicted RBP12.27□□□□□ -0.45
LIG3-205ENST00000585941 ZNF486Q96H40 463 aaPredicted RBP12.27□□□□□ -0.45
LIG3-205ENST00000585941 OCSTAMPQ9BR26 566 aa12.27□□□□□ -0.45
LIG3-205ENST00000585941 BEX2Q9BXY8 128 aa12.27□□□□□ -0.45
LIG3-205ENST00000585941 ELF5Q9UKW6 265 aaPredicted RBP12.27□□□□□ -0.45
LIG3-205ENST00000585941 A0A1W2PP11 408 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 AKR7A2O43488 359 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 CRHP06850 196 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 IGHV1-2P23083 117 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 BLVRBP30043 206 aaPredicted RBP12.26□□□□□ -0.45
LIG3-205ENST00000585941 KIR2DL2P43627 348 aaPredicted RBP12.26□□□□□ -0.45
LIG3-205ENST00000585941 MRPS15P82914 257 aaKnown RBP12.26□□□□□ -0.45
LIG3-205ENST00000585941 GCNT2Q8N0V5 402 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 BPIFB2Q8N4F0 458 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 CNEP1R1Q8N9A8 125 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 OR56B2PQ8NGI1 322 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 ARHGAP5-AS1Q96IT6 56 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 Q96M66 194 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 MYOZ1Q9NP98 299 aaPredicted RBP12.26□□□□□ -0.45
LIG3-205ENST00000585941 PTTG3PQ9NZH4 202 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 POU2F3Q9UKI9 436 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 PAIP2BQ9ULR5 123 aaKnown RBP12.26□□□□□ -0.45
LIG3-205ENST00000585941 KCNK7Q9Y2U2 307 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 IGKV1-27A0A075B6S5 117 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 UBE2QL1A1L167 161 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 PYCARD-AS1I3L0S3 204 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms