RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 F12P00748 615 aaPredicted RBP13.2□□□□□ -0.3
SS18-216ENST00000580751 IGHV1-46P01743 117 aa13.2□□□□□ -0.3
SS18-216ENST00000580751 TNFSF4P23510 183 aa13.2□□□□□ -0.3
SS18-216ENST00000580751 GSK3AP49840 483 aa13.2□□□□□ -0.3
SS18-216ENST00000580751 RORCP51449 518 aa13.2□□□□□ -0.3
SS18-216ENST00000580751 DYNC1I2Q13409 638 aaKnown RBP13.2□□□□□ -0.3
SS18-216ENST00000580751 DGUOKQ16854 277 aa13.2□□□□□ -0.3
SS18-216ENST00000580751 PRSS57Q6UWY2 283 aa13.2□□□□□ -0.3
SS18-216ENST00000580751 UTS2BQ765I0 119 aa13.2□□□□□ -0.3
SS18-216ENST00000580751 CSNK2A3Q8NEV1 391 aa13.2□□□□□ -0.3
SS18-216ENST00000580751 SEMA6DQ8NFY4 1073 aa13.2□□□□□ -0.3
SS18-216ENST00000580751 OR51A4Q8NGJ6 313 aa13.2□□□□□ -0.3
SS18-216ENST00000580751 OR13C5Q8NGS8 318 aa13.2□□□□□ -0.3
SS18-216ENST00000580751 OR10AC1Q8NH08 325 aa13.2□□□□□ -0.3
SS18-216ENST00000580751 GTF3AQ92664 365 aaKnown RBP13.2□□□□□ -0.3
SS18-216ENST00000580751 SLC25A46Q96AG3 418 aa13.2□□□□□ -0.3
SS18-216ENST00000580751 SLC30A2Q9BRI3 323 aa13.2□□□□□ -0.3
SS18-216ENST00000580751 ZCCHC4Q9H5U6 513 aa13.2□□□□□ -0.3
SS18-216ENST00000580751 PLEKHA1Q9HB21 404 aa13.2□□□□□ -0.3
SS18-216ENST00000580751 MYOZ1Q9NP98 299 aaPredicted RBP13.2□□□□□ -0.3
SS18-216ENST00000580751 TMEM100Q9NV29 134 aa13.2□□□□□ -0.3
SS18-216ENST00000580751 ITPR3Q14573 2671 aa13.19□□□□□ -0.3
SS18-216ENST00000580751 ANKRD30BLA7E2S9 258 aa13.19□□□□□ -0.3
SS18-216ENST00000580751 NDUFS7O75251 213 aa13.19□□□□□ -0.3
SS18-216ENST00000580751 CDRT1O95170 752 aa13.19□□□□□ -0.3
SS18-216ENST00000580751 CD55P08174 381 aa13.19□□□□□ -0.3
SS18-216ENST00000580751 CD37P11049 281 aa13.19□□□□□ -0.3
SS18-216ENST00000580751 ZNF20P17024 532 aa13.19□□□□□ -0.3
SS18-216ENST00000580751 IGFBP3P17936 291 aaPredicted RBP13.19□□□□□ -0.3
SS18-216ENST00000580751 CFPP27918 469 aa13.19□□□□□ -0.3
SS18-216ENST00000580751 SDC2P34741 201 aa13.19□□□□□ -0.3
SS18-216ENST00000580751 SOX2P48431 317 aa13.19□□□□□ -0.3
SS18-216ENST00000580751 PPP3R1P63098 170 aa13.19□□□□□ -0.3
SS18-216ENST00000580751 INSL4Q14641 139 aa13.19□□□□□ -0.3
SS18-216ENST00000580751 ODF4Q2M2E3 257 aa13.19□□□□□ -0.3
SS18-216ENST00000580751 Q5PR19 223 aa13.19□□□□□ -0.3
SS18-216ENST00000580751 SHEQ5VZ18 495 aa13.19□□□□□ -0.3
SS18-216ENST00000580751 ZNF529Q6P280 563 aa13.19□□□□□ -0.3
SS18-216ENST00000580751 Q6ZR03 302 aa13.19□□□□□ -0.3
SS18-216ENST00000580751 NKAIN3Q8N8D7 197 aa13.19□□□□□ -0.3
SS18-216ENST00000580751 OR2Z1Q8NG97 314 aa13.19□□□□□ -0.3
SS18-216ENST00000580751 NDNFQ8TB73 568 aa13.19□□□□□ -0.3
SS18-216ENST00000580751 AP3S1Q92572 193 aa13.19□□□□□ -0.3
SS18-216ENST00000580751 ELMOD3Q96FG2 381 aa13.19□□□□□ -0.3
SS18-216ENST00000580751 LYZL4Q96KX0 146 aa13.19□□□□□ -0.3
SS18-216ENST00000580751 MRI1Q9BV20 369 aa13.19□□□□□ -0.3
SS18-216ENST00000580751 EGLN1Q9GZT9 426 aa13.19□□□□□ -0.3
SS18-216ENST00000580751 PPIL3Q9H2H8 161 aaKnown RBP13.19□□□□□ -0.3
SS18-216ENST00000580751 ABCB9Q9NP78 766 aa13.19□□□□□ -0.3
SS18-216ENST00000580751 DECR2Q9NUI1 292 aa13.19□□□□□ -0.3
SS18-216ENST00000580751 ITGB1BP2Q9UKP3 347 aa13.19□□□□□ -0.3
SS18-216ENST00000580751 PRRC2AP48634 2157 aaKnown RBP13.19□□□□□ -0.3
SS18-216ENST00000580751 A0A1B0GWJ7 208 aa13.18□□□□□ -0.3
SS18-216ENST00000580751 TPD52L2O43399 206 aaKnown RBP13.18□□□□□ -0.3
SS18-216ENST00000580751 LILRA1O75019 489 aa13.18□□□□□ -0.3
SS18-216ENST00000580751 CSF3P09919 207 aa13.18□□□□□ -0.3
SS18-216ENST00000580751 RAB3BP20337 219 aa13.18□□□□□ -0.3
SS18-216ENST00000580751 GNALP38405 381 aa13.18□□□□□ -0.3
SS18-216ENST00000580751 RPS19P39019 145 aaKnown RBP13.18□□□□□ -0.3
SS18-216ENST00000580751 MAGEB1P43366 347 aa13.18□□□□□ -0.3
SS18-216ENST00000580751 CCL8P80075 99 aa13.18□□□□□ -0.3
SS18-216ENST00000580751 TNFAIP6P98066 277 aaPredicted RBP13.18□□□□□ -0.3
SS18-216ENST00000580751 FGGYQ96C11 551 aa13.18□□□□□ -0.3
SS18-216ENST00000580751 FOXRED1Q96CU9 486 aaPredicted RBP13.18□□□□□ -0.3
SS18-216ENST00000580751 KCTD12Q96CX2 325 aaKnown RBP13.18□□□□□ -0.3
SS18-216ENST00000580751 FAM71F1Q96KD3 344 aaPredicted RBP13.18□□□□□ -0.3
SS18-216ENST00000580751 SAP30LQ9HAJ7 183 aa13.18□□□□□ -0.3
SS18-216ENST00000580751 NOTOA8MTQ0 251 aa13.17□□□□□ -0.3
SS18-216ENST00000580751 SSX4O60224 188 aa13.17□□□□□ -0.3
SS18-216ENST00000580751 GMDSO60547 372 aa13.17□□□□□ -0.3
SS18-216ENST00000580751 ALDOBP05062 364 aa13.17□□□□□ -0.3
SS18-216ENST00000580751 DAOP14920 347 aa13.17□□□□□ -0.3
SS18-216ENST00000580751 ZNF182P17025 639 aaPredicted RBP13.17□□□□□ -0.3
SS18-216ENST00000580751 RAB3AP20336 220 aa13.17□□□□□ -0.3
SS18-216ENST00000580751 CA6P23280 308 aa13.17□□□□□ -0.3
SS18-216ENST00000580751 DSCR9P59020 149 aa13.17□□□□□ -0.3
SS18-216ENST00000580751 MRPS11P82912 194 aaKnown RBP13.17□□□□□ -0.3
SS18-216ENST00000580751 TESK1Q15569 626 aa13.17□□□□□ -0.3
SS18-216ENST00000580751 TMEM42Q69YG0 159 aa13.17□□□□□ -0.3
SS18-216ENST00000580751 CLEC2AQ6UVW9 174 aa13.17□□□□□ -0.3
SS18-216ENST00000580751 OR10AD1Q8NGE0 317 aa13.17□□□□□ -0.3
SS18-216ENST00000580751 ACOT12Q8WYK0 555 aa13.17□□□□□ -0.3
SS18-216ENST00000580751 CPNE2Q96FN4 548 aaPredicted RBP13.17□□□□□ -0.3
SS18-216ENST00000580751 ADAT1Q9BUB4 502 aaKnown RBP13.17□□□□□ -0.3
SS18-216ENST00000580751 PAPOLGQ9BWT3 736 aaKnown RBP13.17□□□□□ -0.3
SS18-216ENST00000580751 CHST5Q9GZS9 411 aa13.17□□□□□ -0.3
SS18-216ENST00000580751 RNF167Q9H6Y7 350 aa13.17□□□□□ -0.3
SS18-216ENST00000580751 TMEM138Q9NPI0 162 aa13.17□□□□□ -0.3
SS18-216ENST00000580751 IL19Q9UHD0 177 aa13.17□□□□□ -0.3
SS18-216ENST00000580751 A0A075B6Q4 140 aa13.16□□□□□ -0.3
SS18-216ENST00000580751 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.16□□□□□ -0.3
SS18-216ENST00000580751 ZNF816-ZNF321PA0A0X1KG74 233 aa13.16□□□□□ -0.3
SS18-216ENST00000580751 MLNRO43193 412 aa13.16□□□□□ -0.3
SS18-216ENST00000580751 SULT1B1O43704 296 aa13.16□□□□□ -0.3
SS18-216ENST00000580751 NCR1O76036 304 aa13.16□□□□□ -0.3
SS18-216ENST00000580751 LY6HO94772 140 aa13.16□□□□□ -0.3
SS18-216ENST00000580751 CST4P01036 141 aa13.16□□□□□ -0.3
SS18-216ENST00000580751 HPXP02790 462 aa13.16□□□□□ -0.3
SS18-216ENST00000580751 TNFRSF1AP19438 455 aa13.16□□□□□ -0.3
SS18-216ENST00000580751 ACKR3P25106 362 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms