RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 ZNF829Q3KNS6 432 aaPredicted RBP11.93□□□□□ -0.5
SMARCE1-216ENST00000580419 OLFML2AQ68BL7 652 aa11.93□□□□□ -0.5
SMARCE1-216ENST00000580419 NCR3LG1Q68D85 454 aa11.93□□□□□ -0.5
SMARCE1-216ENST00000580419 GDPGP1Q6ZNW5 385 aa11.93□□□□□ -0.5
SMARCE1-216ENST00000580419 KRT77Q7Z794 578 aa11.93□□□□□ -0.5
SMARCE1-216ENST00000580419 ZNF671Q8TAW3 534 aa11.93□□□□□ -0.5
SMARCE1-216ENST00000580419 HPSE2Q8WWQ2 592 aa11.93□□□□□ -0.5
SMARCE1-216ENST00000580419 ST8SIA4Q92187 359 aa11.93□□□□□ -0.5
SMARCE1-216ENST00000580419 UTP4Q969X6 686 aaKnown RBP11.93□□□□□ -0.5
SMARCE1-216ENST00000580419 SLC7A6OSQ96CW6 309 aaPredicted RBP11.93□□□□□ -0.5
SMARCE1-216ENST00000580419 RNF170Q96K19 258 aa11.93□□□□□ -0.5
SMARCE1-216ENST00000580419 OR8B4Q96RC9 309 aa11.93□□□□□ -0.5
SMARCE1-216ENST00000580419 CCL13Q99616 98 aa11.93□□□□□ -0.5
SMARCE1-216ENST00000580419 CITED1Q99966 193 aa11.93□□□□□ -0.5
SMARCE1-216ENST00000580419 OR51I2Q9H344 312 aa11.93□□□□□ -0.5
SMARCE1-216ENST00000580419 METTL8Q9H825 291 aaKnown RBP11.93□□□□□ -0.5
SMARCE1-216ENST00000580419 PAPOLBQ9NRJ5 636 aaKnown RBP11.93□□□□□ -0.5
SMARCE1-216ENST00000580419 C1RLQ9NZP8 487 aa11.93□□□□□ -0.5
SMARCE1-216ENST00000580419 N6AMT1Q9Y5N5 214 aa11.93□□□□□ -0.5
SMARCE1-216ENST00000580419 MDFIC2A0A1B0GVS7 189 aa11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 TMEM269A0A1B0GVZ9 245 aa11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 SLC22A31A6NKX4 558 aa11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 ZNF850A8MQ14 1090 aa11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 NOS1APO75052 506 aaPredicted RBP11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 DNAJC8O75937 253 aaPredicted RBP11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 CLPXO76031 633 aa11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 KNG1P01042 644 aa11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 MDKP21741 143 aaPredicted RBP11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 UBE2E1P51965 193 aa11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 HOXA4Q00056 320 aaPredicted RBP11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 RIPPLY1Q0D2K3 151 aa11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 APOFQ13790 326 aa11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 SNAPC1Q16533 368 aa11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 AANATQ16613 207 aa11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 TMEM42Q69YG0 159 aa11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 FIP1L1Q6UN15 594 aaKnown RBP11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 TREML4Q6UXN2 200 aa11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 VMO1Q7Z5L0 202 aa11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 SPATA24Q86W54 205 aa11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 OR5R1Q8NH85 324 aa11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 TNFRSF14Q92956 283 aa11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 LHX4Q969G2 390 aa11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 SDSLQ96GA7 329 aa11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 OSBPL10Q9BXB5 764 aa11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 RASSF4Q9H2L5 321 aa11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 C16orf95Q9H693 158 aa11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 FAM53CQ9NYF3 392 aa11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 DNAJB11Q9UBS4 358 aa11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 KLHDC2Q9Y2U9 406 aa11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 SOX21Q9Y651 276 aaPredicted RBP11.92□□□□□ -0.5
SMARCE1-216ENST00000580419 DSCAML1Q8TD84 2053 aa11.91□□□□□ -0.5
SMARCE1-216ENST00000580419 IGHV3OR15-7A0A075B7D8 119 aa11.91□□□□□ -0.5
SMARCE1-216ENST00000580419 CCDC182A6NF36 153 aa11.91□□□□□ -0.5
SMARCE1-216ENST00000580419 OR2AT4A6NND4 320 aa11.91□□□□□ -0.5
SMARCE1-216ENST00000580419 DHRS3O75911 302 aa11.91□□□□□ -0.5
SMARCE1-216ENST00000580419 EEF1B2P24534 225 aaKnown RBP11.91□□□□□ -0.5
SMARCE1-216ENST00000580419 RIDAP52758 137 aaKnown RBP11.91□□□□□ -0.5
SMARCE1-216ENST00000580419 RPS7P62081 194 aaKnown RBP11.91□□□□□ -0.5
SMARCE1-216ENST00000580419 RELBQ01201 579 aa11.91□□□□□ -0.5
SMARCE1-216ENST00000580419 PTGES3Q15185 160 aaKnown RBP11.91□□□□□ -0.5
SMARCE1-216ENST00000580419 MIDNQ504T8 468 aa11.91□□□□□ -0.5
SMARCE1-216ENST00000580419 NXNL2Q5VZ03 156 aa11.91□□□□□ -0.5
SMARCE1-216ENST00000580419 RUSC1-AS1Q66K80 236 aa11.91□□□□□ -0.5
SMARCE1-216ENST00000580419 FAM216BQ8N7L0 139 aa11.91□□□□□ -0.5
SMARCE1-216ENST00000580419 Q8N7P7 452 aa11.91□□□□□ -0.5
SMARCE1-216ENST00000580419 DTX3Q8N9I9 347 aa11.91□□□□□ -0.5
SMARCE1-216ENST00000580419 ZSCAN4Q8NAM6 433 aaPredicted RBP11.91□□□□□ -0.5
SMARCE1-216ENST00000580419 CCDC54Q8NEL0 328 aa11.91□□□□□ -0.5
SMARCE1-216ENST00000580419 OR5D13Q8NGL4 314 aa11.91□□□□□ -0.5
SMARCE1-216ENST00000580419 OR5K1Q8NHB7 308 aa11.91□□□□□ -0.5
SMARCE1-216ENST00000580419 FAM81AQ8TBF8 368 aa11.91□□□□□ -0.5
SMARCE1-216ENST00000580419 PIGCQ92535 297 aa11.91□□□□□ -0.5
SMARCE1-216ENST00000580419 DUS3LQ96G46 650 aaKnown RBP11.91□□□□□ -0.5
SMARCE1-216ENST00000580419 GAFA1Q96PS6 74 aa11.91□□□□□ -0.5
SMARCE1-216ENST00000580419 BRD7Q9NPI1 651 aa11.91□□□□□ -0.5
SMARCE1-216ENST00000580419 ZNRD1Q9P1U0 126 aa11.91□□□□□ -0.5
SMARCE1-216ENST00000580419 NLKQ9UBE8 527 aa11.91□□□□□ -0.5
SMARCE1-216ENST00000580419 SLC25A10Q9UBX3 287 aaPredicted RBP11.91□□□□□ -0.5
SMARCE1-216ENST00000580419 ZNF222Q9UK12 451 aa11.91□□□□□ -0.5
SMARCE1-216ENST00000580419 DLGAP1O14490 977 aa11.9□□□□□ -0.5
SMARCE1-216ENST00000580419 GPR137BO60478 399 aa11.9□□□□□ -0.5
SMARCE1-216ENST00000580419 SRSF10O75494 262 aaKnown RBP11.9□□□□□ -0.5
SMARCE1-216ENST00000580419 TSPAN9O75954 239 aa11.9□□□□□ -0.5
SMARCE1-216ENST00000580419 PRKACGP22612 351 aa11.9□□□□□ -0.5
SMARCE1-216ENST00000580419 GLRA1P23415 457 aa11.9□□□□□ -0.5
SMARCE1-216ENST00000580419 RASSF2P50749 326 aa11.9□□□□□ -0.5
SMARCE1-216ENST00000580419 EGR3Q06889 387 aa11.9□□□□□ -0.5
SMARCE1-216ENST00000580419 GFOD2Q3B7J2 385 aa11.9□□□□□ -0.5
SMARCE1-216ENST00000580419 AADACL4Q5VUY2 407 aa11.9□□□□□ -0.5
SMARCE1-216ENST00000580419 C17orf107Q6ZR85 190 aa11.9□□□□□ -0.5
SMARCE1-216ENST00000580419 MEPCEQ7L2J0 689 aaKnown RBP11.9□□□□□ -0.5
SMARCE1-216ENST00000580419 ZNF573Q86YE8 665 aa11.9□□□□□ -0.5
SMARCE1-216ENST00000580419 HS3ST5Q8IZT8 346 aa11.9□□□□□ -0.5
SMARCE1-216ENST00000580419 BBS1Q8NFJ9 593 aa11.9□□□□□ -0.5
SMARCE1-216ENST00000580419 AQP3Q92482 292 aa11.9□□□□□ -0.5
SMARCE1-216ENST00000580419 RPL3LQ92901 407 aaKnown RBP11.9□□□□□ -0.5
SMARCE1-216ENST00000580419 CNN2Q99439 309 aaKnown RBP11.9□□□□□ -0.5
SMARCE1-216ENST00000580419 FGF23Q9GZV9 251 aaPredicted RBP11.9□□□□□ -0.5
SMARCE1-216ENST00000580419 PBOV1Q9GZY1 135 aa11.9□□□□□ -0.5
SMARCE1-216ENST00000580419 GABARAPL1Q9H0R8 117 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms