RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 ATPAF1Q5TC12 328 aaPredicted RBP12.33□□□□□ -0.44
SS18-212ENST00000579061 KCTD8Q6ZWB6 473 aa12.33□□□□□ -0.44
SS18-212ENST00000579061 SLC36A1Q7Z2H8 476 aa12.33□□□□□ -0.44
SS18-212ENST00000579061 PQLC1Q8N2U9 271 aa12.33□□□□□ -0.44
SS18-212ENST00000579061 YIPF7Q8N8F6 280 aa12.33□□□□□ -0.44
SS18-212ENST00000579061 RPL3LQ92901 407 aaKnown RBP12.33□□□□□ -0.44
SS18-212ENST00000579061 TECTBQ96PL2 329 aa12.33□□□□□ -0.44
SS18-212ENST00000579061 TBX5Q99593 518 aa12.33□□□□□ -0.44
SS18-212ENST00000579061 SLC6A7Q99884 636 aa12.33□□□□□ -0.44
SS18-212ENST00000579061 OR51I2Q9H344 312 aa12.33□□□□□ -0.44
SS18-212ENST00000579061 GTF2A1LQ9UNN4 478 aa12.33□□□□□ -0.44
SS18-212ENST00000579061 PIGLQ9Y2B2 252 aa12.33□□□□□ -0.44
SS18-212ENST00000579061 IGHV3OR15-7A0A075B7D8 119 aa12.32□□□□□ -0.44
SS18-212ENST00000579061 A0A1B0GTI1 187 aa12.32□□□□□ -0.44
SS18-212ENST00000579061 SNTNA6NMZ2 147 aa12.32□□□□□ -0.44
SS18-212ENST00000579061 C22orf46C9J442 243 aa12.32□□□□□ -0.44
SS18-212ENST00000579061 TRIM77I1YAP6 450 aa12.32□□□□□ -0.44
SS18-212ENST00000579061 GPR37O15354 613 aa12.32□□□□□ -0.44
SS18-212ENST00000579061 TMPRSS2O15393 492 aa12.32□□□□□ -0.44
SS18-212ENST00000579061 NRASP01111 189 aa12.32□□□□□ -0.44
SS18-212ENST00000579061 FAHP16930 419 aa12.32□□□□□ -0.44
SS18-212ENST00000579061 CCL1P22362 96 aa12.32□□□□□ -0.44
SS18-212ENST00000579061 GPM6AP51674 278 aa12.32□□□□□ -0.44
SS18-212ENST00000579061 ISL1P61371 349 aa12.32□□□□□ -0.44
SS18-212ENST00000579061 ZIK1Q3SY52 487 aaPredicted RBP12.32□□□□□ -0.44
SS18-212ENST00000579061 TMEM42Q69YG0 159 aa12.32□□□□□ -0.44
SS18-212ENST00000579061 ZBTB49Q6ZSB9 765 aa12.32□□□□□ -0.44
SS18-212ENST00000579061 C9orf139Q6ZV77 190 aa12.32□□□□□ -0.44
SS18-212ENST00000579061 MOB3CQ70IA8 216 aa12.32□□□□□ -0.44
SS18-212ENST00000579061 DOK3Q7L591 496 aa12.32□□□□□ -0.44
SS18-212ENST00000579061 CATSPERDQ86XM0 798 aa12.32□□□□□ -0.44
SS18-212ENST00000579061 PNLDC1Q8NA58 520 aaKnown RBP12.32□□□□□ -0.44
SS18-212ENST00000579061 CCDC54Q8NEL0 328 aa12.32□□□□□ -0.44
SS18-212ENST00000579061 OR10H4Q8NGA5 316 aa12.32□□□□□ -0.44
SS18-212ENST00000579061 OR14K1Q8NGZ2 314 aa12.32□□□□□ -0.44
SS18-212ENST00000579061 ZNF671Q8TAW3 534 aa12.32□□□□□ -0.44
SS18-212ENST00000579061 UBE2FQ969M7 185 aa12.32□□□□□ -0.44
SS18-212ENST00000579061 DMRTB1Q96MA1 342 aa12.32□□□□□ -0.44
SS18-212ENST00000579061 SMURF1Q9HCE7 757 aa12.32□□□□□ -0.44
SS18-212ENST00000579061 ZNF69Q9UC07 566 aa12.32□□□□□ -0.44
SS18-212ENST00000579061 PCDHGB1Q9Y5G3 927 aa12.32□□□□□ -0.44
SS18-212ENST00000579061 ZNF732B4DXR9 585 aa12.31□□□□□ -0.44
SS18-212ENST00000579061 DLGAP1O14490 977 aa12.31□□□□□ -0.44
SS18-212ENST00000579061 DVL1O14640 695 aa12.31□□□□□ -0.44
SS18-212ENST00000579061 MPZL2O60487 215 aa12.31□□□□□ -0.44
SS18-212ENST00000579061 ENTPD6O75354 484 aa12.31□□□□□ -0.44
SS18-212ENST00000579061 RPP14O95059 124 aaKnown RBP12.31□□□□□ -0.44
SS18-212ENST00000579061 APOL3O95236 402 aa12.31□□□□□ -0.44
SS18-212ENST00000579061 PLATP00750 562 aa12.31□□□□□ -0.44
SS18-212ENST00000579061 TGM4P49221 684 aa12.31□□□□□ -0.44
SS18-212ENST00000579061 BPIFB3P59826 476 aa12.31□□□□□ -0.44
SS18-212ENST00000579061 ACTC1P68032 377 aa12.31□□□□□ -0.44
SS18-212ENST00000579061 ACTA1P68133 377 aa12.31□□□□□ -0.44
SS18-212ENST00000579061 ZNF85Q03923 595 aa12.31□□□□□ -0.44
SS18-212ENST00000579061 WDR38Q5JTN6 314 aa12.31□□□□□ -0.44
SS18-212ENST00000579061 CEP78Q5JTW2 689 aa12.31□□□□□ -0.44
SS18-212ENST00000579061 CLVS2Q5SYC1 327 aa12.31□□□□□ -0.44
SS18-212ENST00000579061 PLCXD3Q63HM9 321 aa12.31□□□□□ -0.44
SS18-212ENST00000579061 STUMQ69YW2 141 aa12.31□□□□□ -0.44
SS18-212ENST00000579061 KCTD20Q7Z5Y7 419 aa12.31□□□□□ -0.44
SS18-212ENST00000579061 FAM216AQ8WUB2 273 aa12.31□□□□□ -0.44
SS18-212ENST00000579061 RORBQ92753 470 aa12.31□□□□□ -0.44
SS18-212ENST00000579061 DNAJB11Q9UBS4 358 aa12.31□□□□□ -0.44
SS18-212ENST00000579061 SLC22A13Q9Y226 551 aa12.31□□□□□ -0.44
SS18-212ENST00000579061 GMPPBQ9Y5P6 360 aa12.31□□□□□ -0.44
SS18-212ENST00000579061 ZNF879B4DU55 563 aa12.3□□□□□ -0.44
SS18-212ENST00000579061 J3QRE1 110 aa12.3□□□□□ -0.44
SS18-212ENST00000579061 P2RY10O00398 339 aa12.3□□□□□ -0.44
SS18-212ENST00000579061 FCN3O75636 299 aa12.3□□□□□ -0.44
SS18-212ENST00000579061 FGF12P61328 243 aa12.3□□□□□ -0.44
SS18-212ENST00000579061 RBMS3Q6XE24 437 aaKnown RBP12.3□□□□□ -0.44
SS18-212ENST00000579061 FAM220AQ7Z4H9 259 aa12.3□□□□□ -0.44
SS18-212ENST00000579061 ZNF573Q86YE8 665 aa12.3□□□□□ -0.44
SS18-212ENST00000579061 C22orf15Q8WYQ4 148 aa12.3□□□□□ -0.44
SS18-212ENST00000579061 AQP3Q92482 292 aa12.3□□□□□ -0.44
SS18-212ENST00000579061 RNFT2Q96EX2 444 aa12.3□□□□□ -0.44
SS18-212ENST00000579061 MED30Q96HR3 178 aa12.3□□□□□ -0.44
SS18-212ENST00000579061 MBOAT4Q96T53 435 aa12.3□□□□□ -0.44
SS18-212ENST00000579061 MYCBPQ99417 103 aaPredicted RBP12.3□□□□□ -0.44
SS18-212ENST00000579061 CCL13Q99616 98 aa12.3□□□□□ -0.44
SS18-212ENST00000579061 SLC29A1Q99808 456 aa12.3□□□□□ -0.44
SS18-212ENST00000579061 MS4A7Q9GZW8 240 aaPredicted RBP12.3□□□□□ -0.44
SS18-212ENST00000579061 WDR13Q9H1Z4 485 aa12.3□□□□□ -0.44
SS18-212ENST00000579061 RASSF4Q9H2L5 321 aa12.3□□□□□ -0.44
SS18-212ENST00000579061 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.3□□□□□ -0.44
SS18-212ENST00000579061 EXOGQ9Y2C4 368 aaKnown RBP12.3□□□□□ -0.44
SS18-212ENST00000579061 TRAV40A0A0B4J280 105 aa12.29□□□□□ -0.44
SS18-212ENST00000579061 A0A1B0GVI7 797 aa12.29□□□□□ -0.44
SS18-212ENST00000579061 NKX6-3A6NJ46 265 aa12.29□□□□□ -0.44
SS18-212ENST00000579061 AKR7A2O43488 359 aa12.29□□□□□ -0.44
SS18-212ENST00000579061 NDUFB3O43676 98 aa12.29□□□□□ -0.44
SS18-212ENST00000579061 RGS9O75916 674 aaPredicted RBP12.29□□□□□ -0.44
SS18-212ENST00000579061 IGHV4-38-2P0DP08 117 aa12.29□□□□□ -0.44
SS18-212ENST00000579061 GABRB1P18505 474 aa12.29□□□□□ -0.44
SS18-212ENST00000579061 AMY2BP19961 511 aa12.29□□□□□ -0.44
SS18-212ENST00000579061 GLRA1P23415 457 aa12.29□□□□□ -0.44
SS18-212ENST00000579061 ZSCAN26Q16670 478 aa12.29□□□□□ -0.44
SS18-212ENST00000579061 CDONQ4KMG0 1287 aa12.29□□□□□ -0.44
SS18-212ENST00000579061 LRRC10Q5BKY1 277 aa12.29□□□□□ -0.44
SS18-212ENST00000579061 ZNF788Q6ZQV5 615 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms