RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 VWC2LB2RUY7 222 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 ZNF879B4DU55 563 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 MTRF1O75570 445 aaKnown RBP7.83□□□□□ -1.16
VPS35-211ENST00000569950 ALX3O95076 343 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 NRASP01111 189 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 UCHL1P09936 223 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 HSMCR30P0CW71 290 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 FSTP19883 344 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 DNASE1P24855 282 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 SELENOVP59797 346 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 MRPS11P82912 194 aaKnown RBP7.83□□□□□ -1.16
VPS35-211ENST00000569950 TNFAIP6P98066 277 aaPredicted RBP7.83□□□□□ -1.16
VPS35-211ENST00000569950 RIN1Q13671 783 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 MOGQ16653 247 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 PCGF3Q3KNV8 242 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 CEACAM21Q3KPI0 293 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 ZMAT1Q5H9K5 638 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 ZNF826PQ6ZT77 177 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 LRRTM1Q86UE6 522 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 COMMD2Q86X83 199 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 CALHM1Q8IU99 346 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 ZDHHC23Q8IYP9 409 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 CELF2-AS1Q8N7Q2 184 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 OR1M1Q8NGA1 313 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 OR13C3Q8NGS6 347 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 Q8TCH9 128 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 NEU4Q8WWR8 484 aaPredicted RBP7.83□□□□□ -1.16
VPS35-211ENST00000569950 FCGR1BQ92637 280 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 TMEM203Q969S6 136 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 TMEM106AQ96A25 262 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 TMIGD2Q96BF3 282 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 C10orf35Q96D05 121 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 YIPF6Q96EC8 236 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 PERPQ96FX8 193 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 DIRC2Q96SL1 478 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 FOXC2Q99958 501 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 TMED9Q9BVK6 235 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 COMMD4Q9H0A8 199 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 OR51I2Q9H344 312 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 CXorf56Q9H5V9 222 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 TAS2R4Q9NYW5 299 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 FBXO9Q9UK97 447 aaPredicted RBP7.83□□□□□ -1.16
VPS35-211ENST00000569950 ABCA1O95477 2261 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 NSD1Q96L73 2696 aaPredicted RBP7.83□□□□□ -1.16
VPS35-211ENST00000569950 MALRD1Q5VYJ5 2156 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 DSCAML1Q8TD84 2053 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 A0A1W2PPK0 400 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 F8VVB4 439 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 F8VWA3 439 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 GABRPO00591 440 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 WNT9BO14905 357 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 FCN3O75636 299 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 RHBDL1O75783 438 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 LHBP01229 141 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 OCM2P0CE71 109 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 DAOP14920 347 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 EGR1P18146 543 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 ATF1P18846 271 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 MPZP25189 248 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 GIFP27352 417 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 PSMB9P28065 219 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 GABRA5P31644 462 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 GPM6AP51674 278 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 ATP5J2P56134 94 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 ZP1P60852 638 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 OR8G1Q15617 311 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 ACSM3Q53FZ2 586 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 WDR82Q6UXN9 313 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 MOB3CQ70IA8 216 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 NR2C2APQ86WQ0 139 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 GCSAMQ8N6F7 178 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 WFDC11Q8NEX6 87 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 OR5A2Q8NGI9 324 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 OR13F1Q8NGS4 319 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 OR13C9Q8NGT0 318 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 ZNF420Q8TAQ5 688 aaPredicted RBP7.82□□□□□ -1.16
VPS35-211ENST00000569950 C10orf105Q8TEF2 133 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 PP6455Q8WZ26 134 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 UFD1Q92890 307 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 RPL3LQ92901 407 aaKnown RBP7.82□□□□□ -1.16
VPS35-211ENST00000569950 C1orf147Q96MC9 270 aaPredicted RBP7.82□□□□□ -1.16
VPS35-211ENST00000569950 NKX3-1Q99801 234 aaPredicted RBP7.82□□□□□ -1.16
VPS35-211ENST00000569950 SLC22A4Q9H015 551 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 RAB1BQ9H0U4 201 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 SAP30LQ9HAJ7 183 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 NOX4Q9NPH5 578 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 DHDHQ9UQ10 334 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 MXRA5Q9NR99 2828 aa7.82□□□□□ -1.16
VPS35-211ENST00000569950 IGHV4-30-2A0A087WSY4 118 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 IGKV1-12A0A0C4DH73 117 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 IGHV1-69-2A0A0G2JMI3 117 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 TRDV1A0A1B0GX56 115 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 OR5B21A6NL26 309 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 ZNF732B4DXR9 585 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 CCRL2O00421 344 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 TNFRSF13BO14836 293 aaPredicted RBP7.81□□□□□ -1.16
VPS35-211ENST00000569950 SYNGR1O43759 233 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 SSX4O60224 188 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 CDC14BO60729 498 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 IGKV1D-12P01611 117 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms