RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 IGHV2-5P01817 119 aa11.59□□□□□ -0.55
CLN3-235ENST00000568497 LIMS3P0CW19 117 aa11.59□□□□□ -0.55
CLN3-235ENST00000568497 LIMS4P0CW20 117 aa11.59□□□□□ -0.55
CLN3-235ENST00000568497 TNFRSF1AP19438 455 aa11.59□□□□□ -0.55
CLN3-235ENST00000568497 GNALP38405 381 aa11.59□□□□□ -0.55
CLN3-235ENST00000568497 GPM6AP51674 278 aa11.59□□□□□ -0.55
CLN3-235ENST00000568497 BTG1P62324 171 aa11.59□□□□□ -0.55
CLN3-235ENST00000568497 CDONQ4KMG0 1287 aa11.59□□□□□ -0.55
CLN3-235ENST00000568497 PACRGLQ8N7B6 248 aa11.59□□□□□ -0.55
CLN3-235ENST00000568497 BPIFB6Q8NFQ5 453 aa11.59□□□□□ -0.55
CLN3-235ENST00000568497 OR5T2Q8NGG2 359 aa11.59□□□□□ -0.55
CLN3-235ENST00000568497 OR2G2Q8NGZ5 317 aa11.59□□□□□ -0.55
CLN3-235ENST00000568497 OR51F2Q8NH61 342 aa11.59□□□□□ -0.55
CLN3-235ENST00000568497 TRMT10AQ8TBZ6 339 aaKnown RBP11.59□□□□□ -0.55
CLN3-235ENST00000568497 GGHQ92820 318 aa11.59□□□□□ -0.55
CLN3-235ENST00000568497 RAB1CQ92928 201 aa11.59□□□□□ -0.55
CLN3-235ENST00000568497 ITPKCQ96DU7 683 aa11.59□□□□□ -0.55
CLN3-235ENST00000568497 RNF170Q96K19 258 aa11.59□□□□□ -0.55
CLN3-235ENST00000568497 TMEM165Q9HC07 324 aa11.59□□□□□ -0.55
CLN3-235ENST00000568497 SNTG1Q9NSN8 517 aa11.59□□□□□ -0.55
CLN3-235ENST00000568497 ERVK13-1Q9NX77 482 aa11.59□□□□□ -0.55
CLN3-235ENST00000568497 FRRS1LQ9P0K9 344 aa11.59□□□□□ -0.55
CLN3-235ENST00000568497 SNX5Q9Y5X3 404 aa11.59□□□□□ -0.55
CLN3-235ENST00000568497 SIRT4Q9Y6E7 314 aaPredicted RBP11.59□□□□□ -0.55
CLN3-235ENST00000568497 LOC107986453A0A1B0GWG9 222 aa11.58□□□□□ -0.56
CLN3-235ENST00000568497 CEACAM18A8MTB9 384 aa11.58□□□□□ -0.56
CLN3-235ENST00000568497 ZNF732B4DXR9 585 aa11.58□□□□□ -0.56
CLN3-235ENST00000568497 PLPP2O43688 288 aa11.58□□□□□ -0.56
CLN3-235ENST00000568497 FCN3O75636 299 aa11.58□□□□□ -0.56
CLN3-235ENST00000568497 LALBAP00709 142 aa11.58□□□□□ -0.56
CLN3-235ENST00000568497 GYPAP02724 150 aa11.58□□□□□ -0.56
CLN3-235ENST00000568497 ZNF154Q13106 437 aa11.58□□□□□ -0.56
CLN3-235ENST00000568497 TMED1Q13445 227 aa11.58□□□□□ -0.56
CLN3-235ENST00000568497 TTC23Q5W5X9 447 aa11.58□□□□□ -0.56
CLN3-235ENST00000568497 PLCXD3Q63HM9 321 aa11.58□□□□□ -0.56
CLN3-235ENST00000568497 RHOUQ7L0Q8 258 aa11.58□□□□□ -0.56
CLN3-235ENST00000568497 FAM220AQ7Z4H9 259 aa11.58□□□□□ -0.56
CLN3-235ENST00000568497 THAP5Q7Z6K1 395 aa11.58□□□□□ -0.56
CLN3-235ENST00000568497 OR1M1Q8NGA1 313 aa11.58□□□□□ -0.56
CLN3-235ENST00000568497 LRRC29Q8WV35 223 aa11.58□□□□□ -0.56
CLN3-235ENST00000568497 OR5P3Q8WZ94 311 aa11.58□□□□□ -0.56
CLN3-235ENST00000568497 TFAP2CQ92754 450 aa11.58□□□□□ -0.56
CLN3-235ENST00000568497 TIMD4Q96H15 378 aa11.58□□□□□ -0.56
CLN3-235ENST00000568497 Q96MT0 163 aa11.58□□□□□ -0.56
CLN3-235ENST00000568497 RDH12Q96NR8 316 aa11.58□□□□□ -0.56
CLN3-235ENST00000568497 MNTQ99583 582 aa11.58□□□□□ -0.56
CLN3-235ENST00000568497 TMEM246Q9BRR3 403 aa11.58□□□□□ -0.56
CLN3-235ENST00000568497 WDR13Q9H1Z4 485 aa11.58□□□□□ -0.56
CLN3-235ENST00000568497 SP140LQ9H930 580 aa11.58□□□□□ -0.56
CLN3-235ENST00000568497 MMP26Q9NRE1 261 aa11.58□□□□□ -0.56
CLN3-235ENST00000568497 CMYA5Q8N3K9 4069 aa11.58□□□□□ -0.56
CLN3-235ENST00000568497 A0A0U1RQV5 110 aa11.57□□□□□ -0.56
CLN3-235ENST00000568497 PNMA8CA0A1B0GUJ8 204 aa11.57□□□□□ -0.56
CLN3-235ENST00000568497 ANKRD61A6NGH8 418 aa11.57□□□□□ -0.56
CLN3-235ENST00000568497 AKR7A2O43488 359 aa11.57□□□□□ -0.56
CLN3-235ENST00000568497 PLATP00750 562 aa11.57□□□□□ -0.56
CLN3-235ENST00000568497 AVPP01185 164 aa11.57□□□□□ -0.56
CLN3-235ENST00000568497 IGHA1P01876 353 aa11.57□□□□□ -0.56
CLN3-235ENST00000568497 SELLP14151 372 aa11.57□□□□□ -0.56
CLN3-235ENST00000568497 MAP2K3P46734 347 aa11.57□□□□□ -0.56
CLN3-235ENST00000568497 GALEQ14376 348 aa11.57□□□□□ -0.56
CLN3-235ENST00000568497 IZUMO2Q6UXV1 221 aa11.57□□□□□ -0.56
CLN3-235ENST00000568497 RBMS3Q6XE24 437 aaKnown RBP11.57□□□□□ -0.56
CLN3-235ENST00000568497 AHSA2Q719I0 299 aa11.57□□□□□ -0.56
CLN3-235ENST00000568497 LRRC28Q86X40 367 aaPredicted RBP11.57□□□□□ -0.56
CLN3-235ENST00000568497 KLBQ86Z14 1044 aa11.57□□□□□ -0.56
CLN3-235ENST00000568497 ZDHHC23Q8IYP9 409 aa11.57□□□□□ -0.56
CLN3-235ENST00000568497 C8orf59Q8N0T1 100 aaPredicted RBP11.57□□□□□ -0.56
CLN3-235ENST00000568497 GCSAMQ8N6F7 178 aa11.57□□□□□ -0.56
CLN3-235ENST00000568497 OR13C5Q8NGS8 318 aa11.57□□□□□ -0.56
CLN3-235ENST00000568497 C22orf15Q8WYQ4 148 aa11.57□□□□□ -0.56
CLN3-235ENST00000568497 ORAI1Q96D31 301 aa11.57□□□□□ -0.56
CLN3-235ENST00000568497 ADAT3Q96EY9 351 aaPredicted RBP11.57□□□□□ -0.56
CLN3-235ENST00000568497 PDCD1LG2Q9BQ51 273 aa11.57□□□□□ -0.56
CLN3-235ENST00000568497 FN3KRPQ9HA64 309 aa11.57□□□□□ -0.56
CLN3-235ENST00000568497 ERVK-18Q9QC07 812 aa11.57□□□□□ -0.56
CLN3-235ENST00000568497 RPL36Q9Y3U8 105 aaKnown RBP11.57□□□□□ -0.56
CLN3-235ENST00000568497 V9GYS6 101 aa11.57□□□□□ -0.56
CLN3-235ENST00000568497 PPIAL4EA0A075B759 164 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 ZNF816-ZNF321PA0A0X1KG74 233 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 A0A1B0GVI7 797 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 PPIAL4DF5H284 164 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.56□□□□□ -0.56
CLN3-235ENST00000568497 SYT7O43581 403 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 SYNGR1O43759 233 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 MPZL2O60487 215 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 GMDSO60547 372 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 SULT1C4O75897 302 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 DHRS3O75911 302 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 CST4P01036 141 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 HTR1AP08908 422 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 PPIAL4FP0DN26 164 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 CALCBP10092 127 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 ADRA2CP18825 462 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 C21orf33P30042 268 aaPredicted RBP11.56□□□□□ -0.56
CLN3-235ENST00000568497 DCTDP32321 178 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 DDOSTP39656 456 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 ACTC1P68032 377 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 ACTA1P68133 377 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 PRB3Q04118 309 aaPredicted RBP11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms