RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 CD80P33681 288 aa16.42■□□□□ 0.22
CLN3-225ENST00000566824 ZNF181Q2M3W8 571 aa16.42■□□□□ 0.22
CLN3-225ENST00000566824 CEACAM21Q3KPI0 293 aa16.42■□□□□ 0.22
CLN3-225ENST00000566824 RPL22L1Q6P5R6 122 aaKnown RBP16.42■□□□□ 0.22
CLN3-225ENST00000566824 KCTD8Q6ZWB6 473 aa16.42■□□□□ 0.22
CLN3-225ENST00000566824 BOLLQ8N9W6 283 aaKnown RBP16.42■□□□□ 0.22
CLN3-225ENST00000566824 OR5AK2Q8NH90 309 aa16.42■□□□□ 0.22
CLN3-225ENST00000566824 NPRL2Q8WTW4 380 aa16.42■□□□□ 0.22
CLN3-225ENST00000566824 OR5M11Q96RB7 305 aa16.42■□□□□ 0.22
CLN3-225ENST00000566824 MYCBPQ99417 103 aaPredicted RBP16.42■□□□□ 0.22
CLN3-225ENST00000566824 CDCA4Q9BXL8 241 aa16.42■□□□□ 0.22
CLN3-225ENST00000566824 TLNRD1Q9H1K6 362 aa16.42■□□□□ 0.22
CLN3-225ENST00000566824 LSM2Q9Y333 95 aaKnown RBP16.42■□□□□ 0.22
CLN3-225ENST00000566824 TPRKBQ9Y3C4 175 aa16.42■□□□□ 0.22
CLN3-225ENST00000566824 SONP18583 2426 aaKnown RBP16.41■□□□□ 0.22
CLN3-225ENST00000566824 ISPDA4D126 451 aa16.41■□□□□ 0.22
CLN3-225ENST00000566824 FAM157AC9JC47 383 aa16.41■□□□□ 0.22
CLN3-225ENST00000566824 CDIPTO14735 213 aa16.41■□□□□ 0.22
CLN3-225ENST00000566824 CHN2P52757 468 aa16.41■□□□□ 0.22
CLN3-225ENST00000566824 BTG1P62324 171 aa16.41■□□□□ 0.22
CLN3-225ENST00000566824 SLC3A1Q07837 685 aa16.41■□□□□ 0.22
CLN3-225ENST00000566824 MRPL28Q13084 256 aaKnown RBP16.41■□□□□ 0.22
CLN3-225ENST00000566824 FAM76BQ5HYJ3 339 aa16.41■□□□□ 0.22
CLN3-225ENST00000566824 WDR82Q6UXN9 313 aa16.41■□□□□ 0.22
CLN3-225ENST00000566824 GCSAMQ8N6F7 178 aa16.41■□□□□ 0.22
CLN3-225ENST00000566824 SCCPDHQ8NBX0 429 aa16.41■□□□□ 0.22
CLN3-225ENST00000566824 OR13C5Q8NGS8 318 aa16.41■□□□□ 0.22
CLN3-225ENST00000566824 MYDGFQ969H8 173 aa16.41■□□□□ 0.22
CLN3-225ENST00000566824 ITFG2Q969R8 447 aa16.41■□□□□ 0.22
CLN3-225ENST00000566824 SEH1LQ96EE3 360 aa16.41■□□□□ 0.22
CLN3-225ENST00000566824 OR51I2Q9H344 312 aa16.41■□□□□ 0.22
CLN3-225ENST00000566824 TMEM165Q9HC07 324 aa16.41■□□□□ 0.22
CLN3-225ENST00000566824 RNF7Q9UBF6 113 aa16.41■□□□□ 0.22
CLN3-225ENST00000566824 HHLA2Q9UM44 414 aa16.41■□□□□ 0.22
CLN3-225ENST00000566824 PNMA8CA0A1B0GUJ8 204 aa16.4■□□□□ 0.22
CLN3-225ENST00000566824 ANKRD61A6NGH8 418 aa16.4■□□□□ 0.22
CLN3-225ENST00000566824 TMEM212A6NML5 194 aa16.4■□□□□ 0.22
CLN3-225ENST00000566824 RHBDL1O75783 438 aa16.4■□□□□ 0.22
CLN3-225ENST00000566824 WNT4P56705 351 aa16.4■□□□□ 0.22
CLN3-225ENST00000566824 MED21Q13503 144 aa16.4■□□□□ 0.22
CLN3-225ENST00000566824 CCDC58Q4VC31 144 aa16.4■□□□□ 0.22
CLN3-225ENST00000566824 RNLSQ5VYX0 342 aa16.4■□□□□ 0.22
CLN3-225ENST00000566824 DMKNQ6E0U4 476 aaPredicted RBP16.4■□□□□ 0.22
CLN3-225ENST00000566824 CLEC9AQ6UXN8 241 aa16.4■□□□□ 0.22
CLN3-225ENST00000566824 RNF144BQ7Z419 303 aa16.4■□□□□ 0.22
CLN3-225ENST00000566824 BIVMQ86UB2 503 aa16.4■□□□□ 0.22
CLN3-225ENST00000566824 LRRC28Q86X40 367 aaPredicted RBP16.4■□□□□ 0.22
CLN3-225ENST00000566824 DEFB108BQ8NET1 73 aa16.4■□□□□ 0.22
CLN3-225ENST00000566824 OR5A2Q8NGI9 324 aa16.4■□□□□ 0.22
CLN3-225ENST00000566824 OR13C3Q8NGS6 347 aa16.4■□□□□ 0.22
CLN3-225ENST00000566824 OR11L1Q8NGX0 322 aa16.4■□□□□ 0.22
CLN3-225ENST00000566824 TRMT10AQ8TBZ6 339 aaKnown RBP16.4■□□□□ 0.22
CLN3-225ENST00000566824 ERGIC1Q969X5 290 aa16.4■□□□□ 0.22
CLN3-225ENST00000566824 TIMD4Q96H15 378 aa16.4■□□□□ 0.22
CLN3-225ENST00000566824 HIST1H2AAQ96QV6 131 aa16.4■□□□□ 0.22
CLN3-225ENST00000566824 PLEKHA1Q9HB21 404 aa16.4■□□□□ 0.22
CLN3-225ENST00000566824 ABCB9Q9NP78 766 aa16.4■□□□□ 0.22
CLN3-225ENST00000566824 ANK3Q12955 4377 aaKnown RBP16.4■□□□□ 0.22
CLN3-225ENST00000566824 IGKV1-27A0A075B6S5 117 aa16.39■□□□□ 0.21
CLN3-225ENST00000566824 IGKV1-9A0A0C4DH69 117 aa16.39■□□□□ 0.21
CLN3-225ENST00000566824 hCG_1807616A0A1W2PRN6 198 aa16.39■□□□□ 0.21
CLN3-225ENST00000566824 PQLC2LA1A4F0 135 aa16.39■□□□□ 0.21
CLN3-225ENST00000566824 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP16.39■□□□□ 0.21
CLN3-225ENST00000566824 IFNL4K9M1U5 179 aa16.39■□□□□ 0.21
CLN3-225ENST00000566824 MYL12BO14950 172 aa16.39■□□□□ 0.21
CLN3-225ENST00000566824 RGS10O43665 173 aa16.39■□□□□ 0.21
CLN3-225ENST00000566824 LHBP01229 141 aa16.39■□□□□ 0.21
CLN3-225ENST00000566824 MAP2K4P45985 399 aa16.39■□□□□ 0.21
CLN3-225ENST00000566824 CDH15P55291 814 aa16.39■□□□□ 0.21
CLN3-225ENST00000566824 MZT1Q08AG7 82 aa16.39■□□□□ 0.21
CLN3-225ENST00000566824 RBM48Q5RL73 367 aaKnown RBP16.39■□□□□ 0.21
CLN3-225ENST00000566824 SFRP4Q6FHJ7 346 aaPredicted RBP16.39■□□□□ 0.21
CLN3-225ENST00000566824 ASPHD2Q6ICH7 369 aa16.39■□□□□ 0.21
CLN3-225ENST00000566824 CCDC54Q8NEL0 328 aa16.39■□□□□ 0.21
CLN3-225ENST00000566824 LRRC29Q8WV35 223 aa16.39■□□□□ 0.21
CLN3-225ENST00000566824 MSI2Q96DH6 328 aaKnown RBP16.39■□□□□ 0.21
CLN3-225ENST00000566824 CHST5Q9GZS9 411 aa16.39■□□□□ 0.21
CLN3-225ENST00000566824 ZNF665Q9H7R5 613 aa16.39■□□□□ 0.21
CLN3-225ENST00000566824 ERGIC3Q9Y282 383 aa16.39■□□□□ 0.21
CLN3-225ENST00000566824 IGHV3OR15-7A0A075B7D8 119 aa16.38■□□□□ 0.21
CLN3-225ENST00000566824 TMEM210A6NLX4 147 aa16.38■□□□□ 0.21
CLN3-225ENST00000566824 LRRC30A6NM36 301 aa16.38■□□□□ 0.21
CLN3-225ENST00000566824 IGHV2-5P01817 119 aa16.38■□□□□ 0.21
CLN3-225ENST00000566824 ZNF16P17020 682 aaPredicted RBP16.38■□□□□ 0.21
CLN3-225ENST00000566824 SOX2P48431 317 aa16.38■□□□□ 0.21
CLN3-225ENST00000566824 GMFBP60983 142 aa16.38■□□□□ 0.21
CLN3-225ENST00000566824 RPS11P62280 158 aaKnown RBP eCLIP16.38■□□□□ 0.21
CLN3-225ENST00000566824 GNG3P63215 75 aa16.38■□□□□ 0.21
CLN3-225ENST00000566824 LYPD2Q6UXB3 125 aa16.38■□□□□ 0.21
CLN3-225ENST00000566824 PEG10Q86TG7 708 aaKnown RBP16.38■□□□□ 0.21
CLN3-225ENST00000566824 GHSRQ92847 366 aa16.38■□□□□ 0.21
CLN3-225ENST00000566824 SMIM19Q96E16 107 aa16.38■□□□□ 0.21
CLN3-225ENST00000566824 C1orf159Q96HA4 380 aa16.38■□□□□ 0.21
CLN3-225ENST00000566824 PGLYRP3Q96LB9 341 aa16.38■□□□□ 0.21
CLN3-225ENST00000566824 GAL3ST1Q99999 423 aa16.38■□□□□ 0.21
CLN3-225ENST00000566824 TMEM246Q9BRR3 403 aa16.38■□□□□ 0.21
CLN3-225ENST00000566824 COMMD4Q9H0A8 199 aa16.38■□□□□ 0.21
CLN3-225ENST00000566824 TRIM36Q9NQ86 728 aa16.38■□□□□ 0.21
CLN3-225ENST00000566824 FN1P02751 2386 aaKnown RBP16.37■□□□□ 0.21
CLN3-225ENST00000566824 PPIAL4EA0A075B759 164 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms