RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 ANK2Q01484 3957 aa17.15■□□□□ 0.34
CLN3-219ENST00000565778 A0A1B0GW55 424 aa17.15■□□□□ 0.34
CLN3-219ENST00000565778 ZNF732B4DXR9 585 aa17.15■□□□□ 0.34
CLN3-219ENST00000565778 ZNF670-ZNF695F2Z2N8 137 aa17.15■□□□□ 0.34
CLN3-219ENST00000565778 MAGEB4O15481 346 aaPredicted RBP17.15■□□□□ 0.34
CLN3-219ENST00000565778 DUX4L2P0CJ85 424 aa17.15■□□□□ 0.34
CLN3-219ENST00000565778 DUX4L3P0CJ86 424 aa17.15■□□□□ 0.34
CLN3-219ENST00000565778 DUX4L4P0CJ87 422 aa17.15■□□□□ 0.34
CLN3-219ENST00000565778 DUX4L5P0CJ88 424 aa17.15■□□□□ 0.34
CLN3-219ENST00000565778 DUX4L6P0CJ89 424 aa17.15■□□□□ 0.34
CLN3-219ENST00000565778 DUX4L7P0CJ90 424 aa17.15■□□□□ 0.34
CLN3-219ENST00000565778 MMP9P14780 707 aa17.15■□□□□ 0.34
CLN3-219ENST00000565778 IKZF1Q13422 519 aa17.15■□□□□ 0.34
CLN3-219ENST00000565778 PDCD1Q15116 288 aa17.15■□□□□ 0.34
CLN3-219ENST00000565778 CEACAM21Q3KPI0 293 aa17.15■□□□□ 0.34
CLN3-219ENST00000565778 RUSC1-AS1Q66K80 236 aa17.15■□□□□ 0.34
CLN3-219ENST00000565778 DUX4L9Q6RFH8 374 aaPredicted RBP17.15■□□□□ 0.34
CLN3-219ENST00000565778 FGFRL1Q8N441 504 aa17.15■□□□□ 0.34
CLN3-219ENST00000565778 FAM216BQ8N7L0 139 aa17.15■□□□□ 0.34
CLN3-219ENST00000565778 HPSE2Q8WWQ2 592 aa17.15■□□□□ 0.34
CLN3-219ENST00000565778 TBX15Q96SF7 602 aa17.15■□□□□ 0.34
CLN3-219ENST00000565778 CIB1Q99828 191 aa17.15■□□□□ 0.34
CLN3-219ENST00000565778 FGF23Q9GZV9 251 aaPredicted RBP17.15■□□□□ 0.34
CLN3-219ENST00000565778 DUX4Q9UBX2 424 aa17.15■□□□□ 0.34
CLN3-219ENST00000565778 RPUSD1Q9UJJ7 312 aaKnown RBP17.15■□□□□ 0.34
CLN3-219ENST00000565778 CENPVL3A0A0U1RRI6 287 aa17.14■□□□□ 0.33
CLN3-219ENST00000565778 CLDN34H7C241 214 aa17.14■□□□□ 0.33
CLN3-219ENST00000565778 MTRF1O75570 445 aaKnown RBP17.14■□□□□ 0.33
CLN3-219ENST00000565778 RNASE1P07998 156 aaKnown RBP17.14■□□□□ 0.33
CLN3-219ENST00000565778 POLR2IP36954 125 aaKnown RBP17.14■□□□□ 0.33
CLN3-219ENST00000565778 TGM4P49221 684 aa17.14■□□□□ 0.33
CLN3-219ENST00000565778 GNG3P63215 75 aa17.14■□□□□ 0.33
CLN3-219ENST00000565778 MFGE8Q08431 387 aaPredicted RBP17.14■□□□□ 0.33
CLN3-219ENST00000565778 LRRC10Q5BKY1 277 aa17.14■□□□□ 0.33
CLN3-219ENST00000565778 DMRTC1Q5HYR2 192 aa17.14■□□□□ 0.33
CLN3-219ENST00000565778 ATPAF1Q5TC12 328 aaPredicted RBP17.14■□□□□ 0.33
CLN3-219ENST00000565778 GID4Q8IVV7 300 aa17.14■□□□□ 0.33
CLN3-219ENST00000565778 OR5A2Q8NGI9 324 aa17.14■□□□□ 0.33
CLN3-219ENST00000565778 ZNF671Q8TAW3 534 aa17.14■□□□□ 0.33
CLN3-219ENST00000565778 GATAD2BQ8WXI9 593 aa17.14■□□□□ 0.33
CLN3-219ENST00000565778 LHX4Q969G2 390 aa17.14■□□□□ 0.33
CLN3-219ENST00000565778 CENPNQ96H22 339 aaPredicted RBP17.14■□□□□ 0.33
CLN3-219ENST00000565778 MED30Q96HR3 178 aa17.14■□□□□ 0.33
CLN3-219ENST00000565778 RAB3IPQ96QF0 476 aaPredicted RBP17.14■□□□□ 0.33
CLN3-219ENST00000565778 SIRPDQ9H106 197 aa17.14■□□□□ 0.33
CLN3-219ENST00000565778 ADGRL4Q9HBW9 690 aa17.14■□□□□ 0.33
CLN3-219ENST00000565778 CLN6Q9NWW5 311 aa17.14■□□□□ 0.33
CLN3-219ENST00000565778 NUFIP1Q9UHK0 495 aaKnown RBP17.14■□□□□ 0.33
CLN3-219ENST00000565778 OAZ3Q9UMX2 235 aa17.14■□□□□ 0.33
CLN3-219ENST00000565778 PIGLQ9Y2B2 252 aa17.14■□□□□ 0.33
CLN3-219ENST00000565778 LOC110117498-PIK3R3F6TDL0 507 aa17.13■□□□□ 0.33
CLN3-219ENST00000565778 GPR37O15354 613 aa17.13■□□□□ 0.33
CLN3-219ENST00000565778 HOXA3O43365 443 aaPredicted RBP17.13■□□□□ 0.33
CLN3-219ENST00000565778 AMY2BP19961 511 aa17.13■□□□□ 0.33
CLN3-219ENST00000565778 GLRA1P23415 457 aa17.13■□□□□ 0.33
CLN3-219ENST00000565778 STUMQ69YW2 141 aa17.13■□□□□ 0.33
CLN3-219ENST00000565778 C16orf87Q6PH81 154 aa17.13■□□□□ 0.33
CLN3-219ENST00000565778 KRT74Q7RTS7 529 aa17.13■□□□□ 0.33
CLN3-219ENST00000565778 OR51G2Q8NGK0 314 aa17.13■□□□□ 0.33
CLN3-219ENST00000565778 OR51I2Q9H344 312 aa17.13■□□□□ 0.33
CLN3-219ENST00000565778 RIBC2Q9H4K1 309 aa17.13■□□□□ 0.33
CLN3-219ENST00000565778 TNFRSF19Q9NS68 423 aa17.13■□□□□ 0.33
CLN3-219ENST00000565778 ENPP5Q9UJA9 477 aa17.13■□□□□ 0.33
CLN3-219ENST00000565778 NKX6-3A6NJ46 265 aa17.12■□□□□ 0.33
CLN3-219ENST00000565778 RHBDL1O75783 438 aa17.12■□□□□ 0.33
CLN3-219ENST00000565778 NRASP01111 189 aa17.12■□□□□ 0.33
CLN3-219ENST00000565778 IGLV3-1P01715 115 aa17.12■□□□□ 0.33
CLN3-219ENST00000565778 TTRP02766 147 aa17.12■□□□□ 0.33
CLN3-219ENST00000565778 FAHP16930 419 aa17.12■□□□□ 0.33
CLN3-219ENST00000565778 GABRA2P47869 451 aa17.12■□□□□ 0.33
CLN3-219ENST00000565778 EGR3Q06889 387 aa17.12■□□□□ 0.33
CLN3-219ENST00000565778 CDONQ4KMG0 1287 aa17.12■□□□□ 0.33
CLN3-219ENST00000565778 BCL2L15Q5TBC7 163 aa17.12■□□□□ 0.33
CLN3-219ENST00000565778 PLCXD3Q63HM9 321 aa17.12■□□□□ 0.33
CLN3-219ENST00000565778 H1FXQ92522 213 aaKnown RBP17.12■□□□□ 0.33
CLN3-219ENST00000565778 TBX5Q99593 518 aa17.12■□□□□ 0.33
CLN3-219ENST00000565778 DNTTIP1Q9H147 329 aa17.12■□□□□ 0.33
CLN3-219ENST00000565778 PRDM13Q9H4Q3 707 aa17.12■□□□□ 0.33
CLN3-219ENST00000565778 NOX4Q9NPH5 578 aa17.12■□□□□ 0.33
CLN3-219ENST00000565778 ONECUT1Q9UBC0 465 aa17.12■□□□□ 0.33
CLN3-219ENST00000565778 NLKQ9UBE8 527 aa17.12■□□□□ 0.33
CLN3-219ENST00000565778 WARS2Q9UGM6 360 aaKnown RBP17.12■□□□□ 0.33
CLN3-219ENST00000565778 OR52A1Q9UKL2 312 aa17.12■□□□□ 0.33
CLN3-219ENST00000565778 PCDHGB1Q9Y5G3 927 aa17.12■□□□□ 0.33
CLN3-219ENST00000565778 R4GMQ9 66 aa17.12■□□□□ 0.33
CLN3-219ENST00000565778 IGHV1-69DA0A0B4J2H0 117 aa17.11■□□□□ 0.33
CLN3-219ENST00000565778 SAC3D1A6NKF1 404 aa17.11■□□□□ 0.33
CLN3-219ENST00000565778 DHRS3O75911 302 aa17.11■□□□□ 0.33
CLN3-219ENST00000565778 IGHV1-69P01742 117 aa17.11■□□□□ 0.33
CLN3-219ENST00000565778 TFF1P04155 84 aa17.11■□□□□ 0.33
CLN3-219ENST00000565778 ATP6V1E1P36543 226 aa17.11■□□□□ 0.33
CLN3-219ENST00000565778 ZNF684Q5T5D7 378 aa17.11■□□□□ 0.33
CLN3-219ENST00000565778 ZBTB37Q5TC79 503 aa17.11■□□□□ 0.33
CLN3-219ENST00000565778 Q6YL49 198 aa17.11■□□□□ 0.33
CLN3-219ENST00000565778 ZNF788Q6ZQV5 615 aa17.11■□□□□ 0.33
CLN3-219ENST00000565778 PLEKHG7Q6ZR37 379 aa17.11■□□□□ 0.33
CLN3-219ENST00000565778 PDZD9Q8IXQ8 264 aa17.11■□□□□ 0.33
CLN3-219ENST00000565778 LY6G5BQ8NDX9 201 aa17.11■□□□□ 0.33
CLN3-219ENST00000565778 ANGPTL6Q8NI99 470 aa17.11■□□□□ 0.33
CLN3-219ENST00000565778 TMIGD2Q96BF3 282 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms