RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 RAB3IPQ96QF0 476 aaPredicted RBP18.55■□□□□ 0.56
CLN3-215ENST00000565236 CNN2Q99439 309 aaKnown RBP18.55■□□□□ 0.56
CLN3-215ENST00000565236 PBOV1Q9GZY1 135 aa18.55■□□□□ 0.56
CLN3-215ENST00000565236 DNTTIP1Q9H147 329 aa18.55■□□□□ 0.56
CLN3-215ENST00000565236 ONECUT1Q9UBC0 465 aa18.55■□□□□ 0.56
CLN3-215ENST00000565236 IKZF2Q9UKS7 526 aa18.55■□□□□ 0.56
CLN3-215ENST00000565236 NKX6-3A6NJ46 265 aa18.54■□□□□ 0.56
CLN3-215ENST00000565236 CRYBA1P05813 215 aa18.54■□□□□ 0.56
CLN3-215ENST00000565236 ATP6V1B1P15313 513 aa18.54■□□□□ 0.56
CLN3-215ENST00000565236 AMY2BP19961 511 aa18.54■□□□□ 0.56
CLN3-215ENST00000565236 RIDAP52758 137 aaKnown RBP18.54■□□□□ 0.56
CLN3-215ENST00000565236 RIPPLY1Q0D2K3 151 aa18.54■□□□□ 0.56
CLN3-215ENST00000565236 ATP6AP1Q15904 470 aa18.54■□□□□ 0.56
CLN3-215ENST00000565236 ZNF829Q3KNS6 432 aaPredicted RBP18.54■□□□□ 0.56
CLN3-215ENST00000565236 THAP5Q7Z6K1 395 aa18.54■□□□□ 0.56
CLN3-215ENST00000565236 CMTM4Q8IZR5 234 aa18.54■□□□□ 0.56
CLN3-215ENST00000565236 LY6G5BQ8NDX9 201 aa18.54■□□□□ 0.56
CLN3-215ENST00000565236 OR51E1Q8TCB6 317 aa18.54■□□□□ 0.56
CLN3-215ENST00000565236 MED30Q96HR3 178 aa18.54■□□□□ 0.56
CLN3-215ENST00000565236 DMRTB1Q96MA1 342 aa18.54■□□□□ 0.56
CLN3-215ENST00000565236 OR8B4Q96RC9 309 aa18.54■□□□□ 0.56
CLN3-215ENST00000565236 TTTY10Q9BZA0 68 aa18.54■□□□□ 0.56
CLN3-215ENST00000565236 FGF23Q9GZV9 251 aaPredicted RBP18.54■□□□□ 0.56
CLN3-215ENST00000565236 COPS3Q9UNS2 423 aa18.54■□□□□ 0.56
CLN3-215ENST00000565236 MGAM2Q2M2H8 2515 aa18.53■□□□□ 0.56
CLN3-215ENST00000565236 A0A1B0GVI7 797 aa18.53■□□□□ 0.56
CLN3-215ENST00000565236 FAM181BA6NEQ2 426 aa18.53■□□□□ 0.56
CLN3-215ENST00000565236 ZNF732B4DXR9 585 aa18.53■□□□□ 0.56
CLN3-215ENST00000565236 MITFO75030 526 aaPredicted RBP18.53■□□□□ 0.56
CLN3-215ENST00000565236 MELTFP08582 738 aa18.53■□□□□ 0.56
CLN3-215ENST00000565236 OMGP23515 440 aa18.53■□□□□ 0.56
CLN3-215ENST00000565236 GNG3P63215 75 aa18.53■□□□□ 0.56
CLN3-215ENST00000565236 CEACAM21Q3KPI0 293 aa18.53■□□□□ 0.56
CLN3-215ENST00000565236 KRT74Q7RTS7 529 aa18.53■□□□□ 0.56
CLN3-215ENST00000565236 VMO1Q7Z5L0 202 aa18.53■□□□□ 0.56
CLN3-215ENST00000565236 BCDIN3DQ7Z5W3 292 aaKnown RBP18.53■□□□□ 0.56
CLN3-215ENST00000565236 PDZD9Q8IXQ8 264 aa18.53■□□□□ 0.56
CLN3-215ENST00000565236 TMEM86BQ8N661 226 aa18.53■□□□□ 0.56
CLN3-215ENST00000565236 TCEANCQ8N8B7 351 aa18.53■□□□□ 0.56
CLN3-215ENST00000565236 H1FXQ92522 213 aaKnown RBP18.53■□□□□ 0.56
CLN3-215ENST00000565236 GPR84Q9NQS5 396 aa18.53■□□□□ 0.56
CLN3-215ENST00000565236 SLC22A31A6NKX4 558 aa18.52■□□□□ 0.56
CLN3-215ENST00000565236 PRR32B1ATL7 298 aa18.52■□□□□ 0.56
CLN3-215ENST00000565236 GLRA1P23415 457 aa18.52■□□□□ 0.56
CLN3-215ENST00000565236 FASP25445 335 aa18.52■□□□□ 0.56
CLN3-215ENST00000565236 ACTR3P61158 418 aa18.52■□□□□ 0.56
CLN3-215ENST00000565236 CEP78Q5JTW2 689 aa18.52■□□□□ 0.56
CLN3-215ENST00000565236 SLX4IPQ5VYV7 408 aa18.52■□□□□ 0.56
CLN3-215ENST00000565236 FIP1L1Q6UN15 594 aaKnown RBP18.52■□□□□ 0.56
CLN3-215ENST00000565236 ZNF788Q6ZQV5 615 aa18.52■□□□□ 0.56
CLN3-215ENST00000565236 MOB3CQ70IA8 216 aa18.52■□□□□ 0.56
CLN3-215ENST00000565236 ZDHHC13Q8IUH4 622 aa18.52■□□□□ 0.56
CLN3-215ENST00000565236 OR5A2Q8NGI9 324 aa18.52■□□□□ 0.56
CLN3-215ENST00000565236 ZNF671Q8TAW3 534 aa18.52■□□□□ 0.56
CLN3-215ENST00000565236 TBC1D15Q8TC07 691 aa18.52■□□□□ 0.56
CLN3-215ENST00000565236 SSMEM1Q8WWF3 244 aa18.52■□□□□ 0.56
CLN3-215ENST00000565236 PPP1R14AQ96A00 147 aa18.52■□□□□ 0.56
CLN3-215ENST00000565236 DCTN5Q9BTE1 182 aa18.52■□□□□ 0.56
CLN3-215ENST00000565236 CHIAQ9BZP6 476 aa18.52■□□□□ 0.56
CLN3-215ENST00000565236 OR51I2Q9H344 312 aa18.52■□□□□ 0.56
CLN3-215ENST00000565236 NUFIP1Q9UHK0 495 aaKnown RBP18.52■□□□□ 0.56
CLN3-215ENST00000565236 GTF2A1LQ9UNN4 478 aa18.52■□□□□ 0.56
CLN3-215ENST00000565236 PIGLQ9Y2B2 252 aa18.52■□□□□ 0.56
CLN3-215ENST00000565236 AP4S1Q9Y587 144 aa18.52■□□□□ 0.56
CLN3-215ENST00000565236 POMT1Q9Y6A1 747 aa18.52■□□□□ 0.56
CLN3-215ENST00000565236 PKD1L1Q8TDX9 2849 aa18.52■□□□□ 0.55
CLN3-215ENST00000565236 M0R129 80 aa18.51■□□□□ 0.55
CLN3-215ENST00000565236 MTRF1O75570 445 aaKnown RBP18.51■□□□□ 0.55
CLN3-215ENST00000565236 RHBDL1O75783 438 aa18.51■□□□□ 0.55
CLN3-215ENST00000565236 ATP5HO75947 161 aa18.51■□□□□ 0.55
CLN3-215ENST00000565236 SELLP14151 372 aa18.51■□□□□ 0.55
CLN3-215ENST00000565236 MDKP21741 143 aaPredicted RBP18.51■□□□□ 0.55
CLN3-215ENST00000565236 EPHA2P29317 976 aa18.51■□□□□ 0.55
CLN3-215ENST00000565236 NXNL2Q5VZ03 156 aa18.51■□□□□ 0.55
CLN3-215ENST00000565236 KDM4DQ6B0I6 523 aa18.51■□□□□ 0.55
CLN3-215ENST00000565236 ZNF322Q6U7Q0 402 aaPredicted RBP18.51■□□□□ 0.55
CLN3-215ENST00000565236 SLC35F2Q8IXU6 374 aa18.51■□□□□ 0.55
CLN3-215ENST00000565236 ANGPTL6Q8NI99 470 aa18.51■□□□□ 0.55
CLN3-215ENST00000565236 TMEM163Q8TC26 289 aa18.51■□□□□ 0.55
CLN3-215ENST00000565236 IL4I1Q96RQ9 567 aa18.51■□□□□ 0.55
CLN3-215ENST00000565236 MNTQ99583 582 aa18.51■□□□□ 0.55
CLN3-215ENST00000565236 APOL4Q9BPW4 351 aa18.51■□□□□ 0.55
CLN3-215ENST00000565236 NLKQ9UBE8 527 aa18.51■□□□□ 0.55
CLN3-215ENST00000565236 SLC25A10Q9UBX3 287 aaPredicted RBP18.51■□□□□ 0.55
CLN3-215ENST00000565236 ENOPH1Q9UHY7 261 aa18.51■□□□□ 0.55
CLN3-215ENST00000565236 OR5B21A6NL26 309 aa18.5■□□□□ 0.55
CLN3-215ENST00000565236 OR2AT4A6NND4 320 aa18.5■□□□□ 0.55
CLN3-215ENST00000565236 ZAR1LA6NP61 321 aa18.5■□□□□ 0.55
CLN3-215ENST00000565236 ACAA1P09110 424 aaPredicted RBP18.5■□□□□ 0.55
CLN3-215ENST00000565236 FAHP16930 419 aa18.5■□□□□ 0.55
CLN3-215ENST00000565236 GABRA2P47869 451 aa18.5■□□□□ 0.55
CLN3-215ENST00000565236 CXCR4P61073 352 aa18.5■□□□□ 0.55
CLN3-215ENST00000565236 EFNB1P98172 346 aa18.5■□□□□ 0.55
CLN3-215ENST00000565236 DMRTC1Q5HYR2 192 aa18.5■□□□□ 0.55
CLN3-215ENST00000565236 ZBTB37Q5TC79 503 aa18.5■□□□□ 0.55
CLN3-215ENST00000565236 AADACL4Q5VUY2 407 aa18.5■□□□□ 0.55
CLN3-215ENST00000565236 C1orf146Q5VVC0 180 aa18.5■□□□□ 0.55
CLN3-215ENST00000565236 PLCXD3Q63HM9 321 aa18.5■□□□□ 0.55
CLN3-215ENST00000565236 AMIGO2Q86SJ2 522 aa18.5■□□□□ 0.55
CLN3-215ENST00000565236 KIR3DL3Q8N743 410 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms