RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 SMAD7O15105 426 aaKnown RBP8.23□□□□□ -1.09
CLK3-208ENST00000562626 PIN1P1O15428 100 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 PLPP2O43688 288 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 MTRF1O75570 445 aaKnown RBP8.23□□□□□ -1.09
CLK3-208ENST00000562626 RHBDL1O75783 438 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 NRASP01111 189 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 TFF1P04155 84 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 CELP19835 753 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 GNALP38405 381 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 NR4A2P43354 598 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 SRP9P49458 86 aaKnown RBP8.23□□□□□ -1.09
CLK3-208ENST00000562626 GPM6AP51674 278 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 GP2P55259 537 aaKnown RBP8.23□□□□□ -1.09
CLK3-208ENST00000562626 MRPS11P82912 194 aaKnown RBP8.23□□□□□ -1.09
CLK3-208ENST00000562626 KRTAP1-1Q07627 177 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 ACSM1Q08AH1 577 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 MRPL28Q13084 256 aaKnown RBP8.23□□□□□ -1.09
CLK3-208ENST00000562626 ZMYND11Q15326 602 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 SPHARQ15513 63 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 TBCEQ15813 527 aaPredicted RBP8.23□□□□□ -1.09
CLK3-208ENST00000562626 CEACAM21Q3KPI0 293 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 CLVS2Q5SYC1 327 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 PLCXD3Q63HM9 321 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 CLEC2AQ6UVW9 174 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 CALHM1Q8IU99 346 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 BATF2Q8N1L9 274 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 SCCPDHQ8NBX0 429 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 OR51A2Q8NGJ7 313 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 OR13C3Q8NGS6 347 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 OR8S1Q8NH09 359 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 TRMT10AQ8TBZ6 339 aaKnown RBP8.23□□□□□ -1.09
CLK3-208ENST00000562626 RNF170Q96K19 258 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 SPACA5Q96QH8 159 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 SMR3AQ99954 134 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 TMUB1Q9BVT8 246 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 REG4Q9BYZ8 158 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 EGLN1Q9GZT9 426 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 TLNRD1Q9H1K6 362 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 PPIL3Q9H2H8 161 aaKnown RBP8.23□□□□□ -1.09
CLK3-208ENST00000562626 OR51I2Q9H344 312 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 CHODLQ9H9P2 273 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 TMEM106BQ9NUM4 274 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 C1orf123Q9NWV4 160 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 PPP1R3CQ9UQK1 317 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 WIPI2Q9Y4P8 454 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 CSPG4Q6UVK1 2322 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 TRAV8-7A0A075B6U6 113 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 A0A1W2PPK0 400 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 PQLC2LA1A4F0 135 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 CDIPTO14735 213 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 PPIHO43447 177 aaKnown RBP8.22□□□□□ -1.09
CLK3-208ENST00000562626 SYNGR1O43759 233 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 FCN3O75636 299 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 INMTO95050 263 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 IGHV2-70P01814 119 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 ERCC1P07992 297 aaPredicted RBP8.22□□□□□ -1.09
CLK3-208ENST00000562626 TNFRSF1AP19438 455 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 TNFSF4P23510 183 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 CD80P33681 288 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 RPS25P62851 125 aaKnown RBP8.22□□□□□ -1.09
CLK3-208ENST00000562626 SSX1Q16384 188 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 HFEQ30201 348 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 KCTD21Q4G0X4 260 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 FAM76BQ5HYJ3 339 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 FAM27D1Q5T7N8 215 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 LIPKQ5VXJ0 399 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 WDR82Q6UXN9 313 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 ANGPTL5Q86XS5 388 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 GCSAMQ8N6F7 178 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 CELF2-AS1Q8N7Q2 184 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 OR13C9Q8NGT0 318 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 Q8TCH9 128 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 TSEN15Q8WW01 171 aaKnown RBP8.22□□□□□ -1.09
CLK3-208ENST00000562626 ZNF488Q96MN9 340 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 OR14A2Q96R54 314 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 PIMREGQ9BSJ6 248 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 RTL8AQ9BWD3 113 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 SLC22A4Q9H015 551 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 COMMD4Q9H0A8 199 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 PLEKHA1Q9HB21 404 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 MYOZ1Q9NP98 299 aaPredicted RBP8.22□□□□□ -1.09
CLK3-208ENST00000562626 TAS2R4Q9NYW5 299 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 BLOC1S6Q9UL45 172 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 ZNF281Q9Y2X9 895 aa8.22□□□□□ -1.09
CLK3-208ENST00000562626 SF3B6Q9Y3B4 125 aaKnown RBP8.22□□□□□ -1.09
CLK3-208ENST00000562626 ANK3Q12955 4377 aaKnown RBP8.22□□□□□ -1.09
CLK3-208ENST00000562626 KIAA2026Q5HYC2 2103 aa8.21□□□□□ -1.09
CLK3-208ENST00000562626 IGHV3OR15-7A0A075B7D8 119 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 TRBV5-7A0A0A0MS05 114 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 FAM230AA0A1W2PPH8 454 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 A6NLC8 198 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 ANXA2P2A6NMY6 339 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 CLDN25C9JDP6 229 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 F8VVB4 439 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 F8VWA3 439 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 LHBP01229 141 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 CSF3P09919 207 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 HSMCR30P0CW71 290 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 ATF1P18846 271 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 GPR6P46095 362 aaPredicted RBP8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms