RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	CIB2	O75838	187 aa		11.65	□□□□□ -0.54
TPM1-223	ENST00000560445	FBP1	P09467	338 aa		11.65	□□□□□ -0.54
TPM1-223	ENST00000560445	ARF6	P62330	175 aa		11.65	□□□□□ -0.54
TPM1-223	ENST00000560445	POU4F2	Q12837	409 aa		11.65	□□□□□ -0.54
TPM1-223	ENST00000560445	ATP6AP1	Q15904	470 aa		11.65	□□□□□ -0.54
TPM1-223	ENST00000560445	SMIM21	Q3B7S5	101 aa		11.65	□□□□□ -0.54
TPM1-223	ENST00000560445	CEACAM21	Q3KPI0	293 aa		11.65	□□□□□ -0.54
TPM1-223	ENST00000560445	PRR31	Q5SQ13	230 aa		11.65	□□□□□ -0.54
TPM1-223	ENST00000560445	ZNF684	Q5T5D7	378 aa		11.65	□□□□□ -0.54
TPM1-223	ENST00000560445	STUM	Q69YW2	141 aa		11.65	□□□□□ -0.54
TPM1-223	ENST00000560445	C17orf107	Q6ZR85	190 aa		11.65	□□□□□ -0.54
TPM1-223	ENST00000560445	KRT74	Q7RTS7	529 aa		11.65	□□□□□ -0.54
TPM1-223	ENST00000560445	WDR86	Q86TI4	376 aa		11.65	□□□□□ -0.54
TPM1-223	ENST00000560445	OR5A2	Q8NGI9	324 aa		11.65	□□□□□ -0.54
TPM1-223	ENST00000560445	DYRK2	Q92630	601 aa		11.65	□□□□□ -0.54
TPM1-223	ENST00000560445	LHX4	Q969G2	390 aa		11.65	□□□□□ -0.54
TPM1-223	ENST00000560445	TMIGD2	Q96BF3	282 aa		11.65	□□□□□ -0.54
TPM1-223	ENST00000560445	C1orf147	Q96MC9	270 aa	Predicted RBP	11.65	□□□□□ -0.54
TPM1-223	ENST00000560445	RAB3IP	Q96QF0	476 aa	Predicted RBP	11.65	□□□□□ -0.54
TPM1-223	ENST00000560445	OR8B4	Q96RC9	309 aa		11.65	□□□□□ -0.54
TPM1-223	ENST00000560445	TBX15	Q96SF7	602 aa		11.65	□□□□□ -0.54
TPM1-223	ENST00000560445	CCL13	Q99616	98 aa		11.65	□□□□□ -0.54
TPM1-223	ENST00000560445	RASL12	Q9NYN1	266 aa		11.65	□□□□□ -0.54
TPM1-223	ENST00000560445	NUFIP1	Q9UHK0	495 aa	Known RBP	11.65	□□□□□ -0.54
TPM1-223	ENST00000560445	AP4S1	Q9Y587	144 aa		11.65	□□□□□ -0.54
TPM1-223	ENST00000560445	CENPVL3	A0A0U1RRI6	287 aa		11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	hCG_1809904	A0A1W2PP81	198 aa		11.64	□□□□□ -0.55
TPM1-223	ENST00000560445		A0A1W2PPE2	198 aa		11.64	□□□□□ -0.55
TPM1-223	ENST00000560445		A0A1W2PR64	198 aa		11.64	□□□□□ -0.55
TPM1-223	ENST00000560445		A0A1W2PRV1	198 aa		11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	DHRS7C	A6NNS2	312 aa		11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	LOC110117498-PIK3R3	F6TDL0	507 aa		11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	DHRS3	O75911	302 aa		11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	NDUFA7	O95182	113 aa		11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	SFTPB	P07988	381 aa		11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	EGR1	P18146	543 aa		11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	GLRA1	P23415	457 aa		11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	TGM4	P49221	684 aa		11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	CAV3	P56539	151 aa		11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	EGR3	Q06889	387 aa		11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	IKZF1	Q13422	519 aa		11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	PTGES3	Q15185	160 aa	Known RBP	11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	BCL2L15	Q5TBC7	163 aa		11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	TMEM236	Q5W0B7	351 aa		11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	GDPGP1	Q6ZNW5	385 aa		11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	C1orf122	Q6ZSJ8	110 aa		11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	MEPCE	Q7L2J0	689 aa	Known RBP	11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	ZNF573	Q86YE8	665 aa		11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	C11orf53	Q8IXP5	236 aa		11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	CCDC54	Q8NEL0	328 aa		11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	BBS1	Q8NFJ9	593 aa		11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	C8orf46	Q8TAG6	207 aa		11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	H1FX	Q92522	213 aa	Known RBP	11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	UTP4	Q969X6	686 aa	Known RBP	11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	PBOV1	Q9GZY1	135 aa		11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	METTL8	Q9H825	291 aa	Known RBP	11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	FAM206A	Q9NX38	181 aa		11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	ZNF319	Q9P2F9	582 aa		11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	NLK	Q9UBE8	527 aa		11.64	□□□□□ -0.55
TPM1-223	ENST00000560445	SLC25A10	Q9UBX3	287 aa	Predicted RBP	11.64	□□□□□ -0.55
TPM1-223	ENST00000560445		A0A1W2PQ09	198 aa		11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	OR2AT4	A6NND4	320 aa		11.63	□□□□□ -0.55
TPM1-223	ENST00000560445		M0R1W7	72 aa		11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	SIGLEC5	O15389	551 aa		11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	PAH	P00439	452 aa		11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	KNG1	P01042	644 aa		11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	MELTF	P08582	738 aa		11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	MRPL3	P09001	348 aa	Known RBP	11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	ANOS1	P23352	680 aa		11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	ACKR3	P25106	362 aa		11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	GPM6A	P51674	278 aa		11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	RAG2	P55895	527 aa		11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	SLX4IP	Q5VYV7	408 aa		11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	PLCXD3	Q63HM9	321 aa		11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	ZNF322	Q6U7Q0	402 aa	Predicted RBP	11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	VMO1	Q7Z5L0	202 aa		11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	LDLRAD3	Q86YD5	345 aa		11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	FAM216B	Q8N7L0	139 aa		11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	DTX3	Q8N9I9	347 aa		11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	LY6G5B	Q8NDX9	201 aa		11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	OR5D13	Q8NGL4	314 aa		11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	TMEM163	Q8TC26	289 aa		11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	RPL3L	Q92901	407 aa	Known RBP	11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	RFK	Q969G6	155 aa		11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	MYCBP	Q99417	103 aa	Predicted RBP	11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	DCTN5	Q9BTE1	182 aa		11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	GABARAPL1	Q9H0R8	117 aa		11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	RASSF4	Q9H2L5	321 aa		11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	GPR84	Q9NQS5	396 aa		11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	CLN6	Q9NWW5	311 aa		11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	WARS2	Q9UGM6	360 aa	Known RBP	11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	GTF2A1L	Q9UNN4	478 aa		11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	KLHDC2	Q9Y2U9	406 aa		11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	MGAM2	Q2M2H8	2515 aa		11.63	□□□□□ -0.55
TPM1-223	ENST00000560445	FAM181B	A6NEQ2	426 aa		11.62	□□□□□ -0.55
TPM1-223	ENST00000560445	ZNF732	B4DXR9	585 aa		11.62	□□□□□ -0.55
TPM1-223	ENST00000560445	ANKHD1-EIF4EBP3	H7C0V5	636 aa	Predicted RBP	11.62	□□□□□ -0.55
TPM1-223	ENST00000560445	SLC1A7	O00341	560 aa		11.62	□□□□□ -0.55
TPM1-223	ENST00000560445	KRT8	P05787	483 aa		11.62	□□□□□ -0.55
TPM1-223	ENST00000560445	NDUFB7	P17568	137 aa		11.62	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 6.2 ms