RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 C12orf43Q96C57 262 aaKnown RBP7.87□□□□□ -1.15
LDLR-211ENST00000560173 ITPKCQ96DU7 683 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 MRPL48Q96GC5 212 aaKnown RBP7.87□□□□□ -1.15
LDLR-211ENST00000560173 FAM71F1Q96KD3 344 aaPredicted RBP7.87□□□□□ -1.15
LDLR-211ENST00000560173 GAL3ST1Q99999 423 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 ZNF665Q9H7R5 613 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 FN3KRPQ9HA64 309 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 ABCB9Q9NP78 766 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 FGF20Q9NP95 211 aaPredicted RBP7.87□□□□□ -1.15
LDLR-211ENST00000560173 ISYNA1Q9NPH2 558 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 INPP5EQ9NRR6 644 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 UFSP2Q9NUQ7 469 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 C14orf119Q9NWQ9 140 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 ENPP5Q9UJA9 477 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 GNG8Q9UK08 70 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 SLC22A13Q9Y226 551 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 MPC1Q9Y5U8 109 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 NBEAL1Q6ZS30 2694 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 WNK2Q9Y3S1 2297 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 ZNF816-ZNF321PA0A0X1KG74 233 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 DAPL1A0PJW8 107 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 ANXA2P2A6NMY6 339 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 ZNF850A8MQ14 1090 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 B4DSR2 109 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 P2RY10O00398 339 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 MYL12BO14950 172 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 DHRS3O75911 302 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 INMTO95050 263 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 GABARAPO95166 117 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 FSTL3O95633 263 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 TGFAP01135 160 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 CCL1P22362 96 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 MDH2P40926 338 aaKnown RBP7.86□□□□□ -1.15
LDLR-211ENST00000560173 KIR3DL2P43630 455 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 MAP2K3P46734 347 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 SERPINB10P48595 397 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 RIPPLY1Q0D2K3 151 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 DYNC1I2Q13409 638 aaKnown RBP7.86□□□□□ -1.15
LDLR-211ENST00000560173 LSAMPQ13449 338 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 TMEM155Q4W5P6 130 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 WDR38Q5JTN6 314 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 ZBTB37Q5TC79 503 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 FAM166AQ6J272 317 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 GDPGP1Q6ZNW5 385 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 Q6ZSR3 168 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 LRRC28Q86X40 367 aaPredicted RBP7.86□□□□□ -1.15
LDLR-211ENST00000560173 C1orf87Q8N0U7 546 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 PRSS35Q8N3Z0 413 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 SPICQ8N5J4 248 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 SEMA6DQ8NFY4 1073 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 OR52I1Q8NGK6 324 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 ZFAND2BQ8WV99 257 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 HPSE2Q8WWQ2 592 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 OR5P3Q8WZ94 311 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 RAB39BQ96DA2 213 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 MICU1Q9BPX6 476 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 ZNF649Q9BS31 505 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 ALG8Q9BVK2 526 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 FUNDC2Q9BWH2 189 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 JAM3Q9BX67 310 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 FGF23Q9GZV9 251 aaPredicted RBP7.86□□□□□ -1.15
LDLR-211ENST00000560173 C1orf123Q9NWV4 160 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 TMEM160Q9NX00 188 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 RNF7Q9UBF6 113 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 V9GYS6 101 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 STAB1Q9NY15 2570 aa7.86□□□□□ -1.15
LDLR-211ENST00000560173 A6NLC8 198 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 DHRS7CA6NNS2 312 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 F5H0A9 414 aaPredicted RBP7.85□□□□□ -1.15
LDLR-211ENST00000560173 H3BMQ9 156 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 LMX1BO60663 402 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 MTRF1O75570 445 aaKnown RBP7.85□□□□□ -1.15
LDLR-211ENST00000560173 ZNF205O95201 554 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 GRPP07492 148 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 MSMBP08118 114 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 IRF2P14316 349 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 FAHP16930 419 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 C21orf33P30042 268 aaPredicted RBP7.85□□□□□ -1.15
LDLR-211ENST00000560173 THBS2P35442 1172 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 PSMB10P40306 273 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 DVL1P1P54792 670 aaPredicted RBP7.85□□□□□ -1.15
LDLR-211ENST00000560173 GP2P55259 537 aaKnown RBP7.85□□□□□ -1.15
LDLR-211ENST00000560173 OR12D2P58182 307 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 ACTA2P62736 377 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 ACTG2P63267 376 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 HOXA4Q00056 320 aaPredicted RBP7.85□□□□□ -1.15
LDLR-211ENST00000560173 ZNF154Q13106 437 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 GALEQ14376 348 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 SPHARQ15513 63 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 FAM201AQ5SY85 155 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 FDX2Q6P4F2 183 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 ZNF826PQ6ZT77 177 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 DOK3Q7L591 496 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 KCTD20Q7Z5Y7 419 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 LHFPL3Q86UP9 236 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 EGFL6Q8IUX8 553 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 C11orf53Q8IXP5 236 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 ZDHHC23Q8IYP9 409 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 SYS1Q8N2H4 156 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 MUC20Q8N307 709 aaPredicted RBP7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms