RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 UPB1Q9UBR1 384 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 PLEKHA6Q9Y2H5 1048 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 A0A0U1RQV5 110 aa9.26□□□□□ -0.93
CUX1-217ENST00000558836 MELTFP08582 738 aa9.26□□□□□ -0.93
CUX1-217ENST00000558836 CRYGSP22914 178 aa9.26□□□□□ -0.93
CUX1-217ENST00000558836 PLGLB1Q02325 96 aa9.26□□□□□ -0.93
CUX1-217ENST00000558836 ATXN7L3Q14CW9 347 aaPredicted RBP9.26□□□□□ -0.93
CUX1-217ENST00000558836 ZNF528Q3MIS6 628 aa9.26□□□□□ -0.93
CUX1-217ENST00000558836 LY6G6FQ5SQ64 297 aa9.26□□□□□ -0.93
CUX1-217ENST00000558836 TMPRSS7Q7RTY8 843 aa9.26□□□□□ -0.93
CUX1-217ENST00000558836 C6orf201Q7Z4U5 140 aa9.26□□□□□ -0.93
CUX1-217ENST00000558836 SSC4DQ8WTU2 575 aa9.26□□□□□ -0.93
CUX1-217ENST00000558836 HDHD3Q9BSH5 251 aaPredicted RBP9.26□□□□□ -0.93
CUX1-217ENST00000558836 CHST5Q9GZS9 411 aa9.26□□□□□ -0.93
CUX1-217ENST00000558836 OR10A2Q9H208 303 aa9.26□□□□□ -0.93
CUX1-217ENST00000558836 SLC7A10Q9NS82 523 aa9.26□□□□□ -0.93
CUX1-217ENST00000558836 NOSIPQ9Y314 301 aaKnown RBP9.26□□□□□ -0.93
CUX1-217ENST00000558836 V9GYS6 101 aa9.26□□□□□ -0.93
CUX1-217ENST00000558836 IGKV1-27A0A075B6S5 117 aa9.26□□□□□ -0.93
CUX1-217ENST00000558836 POM121CA8CG34 1229 aa9.26□□□□□ -0.93
CUX1-217ENST00000558836 MCRIP1C9JLW8 97 aa9.26□□□□□ -0.93
CUX1-217ENST00000558836 ZNF587BE7ETH6 402 aa9.26□□□□□ -0.93
CUX1-217ENST00000558836 TEX46H3BTG2 121 aa9.26□□□□□ -0.93
CUX1-217ENST00000558836 MRPL33O75394 65 aaKnown RBP9.26□□□□□ -0.93
CUX1-217ENST00000558836 LHX2P50458 406 aa9.26□□□□□ -0.93
CUX1-217ENST00000558836 TMEM251Q8N6I4 163 aa9.26□□□□□ -0.93
CUX1-217ENST00000558836 LINC00469Q8N7U9 141 aa9.26□□□□□ -0.93
CUX1-217ENST00000558836 CPEB3Q8NE35 698 aaKnown RBP9.26□□□□□ -0.93
CUX1-217ENST00000558836 SEMA6DQ8NFY4 1073 aa9.26□□□□□ -0.93
CUX1-217ENST00000558836 INTS12Q96CB8 462 aaKnown RBP9.26□□□□□ -0.93
CUX1-217ENST00000558836 FAM173AQ9BQD7 235 aa9.26□□□□□ -0.93
CUX1-217ENST00000558836 TMEM9BQ9NQ34 198 aa9.26□□□□□ -0.93
CUX1-217ENST00000558836 PTTG3PQ9NZH4 202 aa9.26□□□□□ -0.93
CUX1-217ENST00000558836 PCDHGA1Q9Y5H4 931 aa9.26□□□□□ -0.93
CUX1-217ENST00000558836 CSAG2Q9Y5P2 127 aa9.26□□□□□ -0.93
CUX1-217ENST00000558836 AKAP13Q12802 2813 aa9.26□□□□□ -0.93
CUX1-217ENST00000558836 ATMQ13315 3056 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 PRSS47A8MTI9 375 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 HLA-HP01893 362 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 CHRM2P08172 466 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 PPP3CBP16298 524 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 CAPZA1P52907 286 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 SEC61A1P61619 476 aaKnown RBP9.25□□□□□ -0.93
CUX1-217ENST00000558836 IL13RA1P78552 427 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 ZNF92Q03936 586 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 RAB35Q15286 201 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 BEX5Q5H9J7 111 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 ABLIM2Q6H8Q1 611 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 VASH2Q86V25 355 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 CPT1CQ8TCG5 803 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 ADAMTS17Q8TE56 1095 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 CCDC107Q8WV48 283 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 CPNE4Q96A23 557 aaPredicted RBP9.25□□□□□ -0.93
CUX1-217ENST00000558836 PRRT1Q99946 306 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 GPR87Q9BY21 358 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 PRRG4Q9BZD6 226 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 OR2H1Q9GZK4 316 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 ARL6Q9H0F7 186 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 WNT5BQ9H1J7 359 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 DEFB127Q9H1M4 99 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 DMXL2Q8TDJ6 3036 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 ARGFXA6NJG6 315 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 TERTO14746 1132 aaKnown RBP9.25□□□□□ -0.93
CUX1-217ENST00000558836 CYTIPO60759 359 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 PRF1P14222 555 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 CD34P28906 385 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 THBS4P35443 961 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 CLDN18P56856 261 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 RPS27AP62979 156 aaKnown RBP9.25□□□□□ -0.93
CUX1-217ENST00000558836 MEF2DQ14814 521 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 TAF9Q16594 264 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 PABPC1L2AQ5JQF8 200 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 DYRK2Q92630 601 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 HAS2Q92819 552 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 URM1Q9BTM9 101 aaKnown RBP9.25□□□□□ -0.93
CUX1-217ENST00000558836 PDCD10Q9BUL8 212 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 ZNF701Q9NV72 531 aaPredicted RBP9.25□□□□□ -0.93
CUX1-217ENST00000558836 LIPGQ9Y5X9 500 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 SMG1Q96Q15 3661 aaKnown RBP9.25□□□□□ -0.93
CUX1-217ENST00000558836 SHANK1Q9Y566 2161 aa9.25□□□□□ -0.93
CUX1-217ENST00000558836 IGKV1D-8A0A087WSZ0 117 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 ZNF503-AS2A6NEH8 195 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 CST2P09228 141 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 ALKAL2Q6UX46 152 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 OR56B1Q8NGI3 324 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 OR52H1Q8NGJ2 320 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 C1QTNF6Q9BXI9 259 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 TIMM10BQ9Y5J6 103 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 FAM221AA4D161 298 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 H3BUI4 141 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 MFNGO00587 321 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 DNPH1O43598 174 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 HPNP05981 417 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 OR3A3P47888 321 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 RRADP55042 308 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 ARF1P84077 181 aaKnown RBP9.24□□□□□ -0.93
CUX1-217ENST00000558836 SCRN3Q0VDG4 424 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 TRIP6Q15654 476 aaKnown RBP9.24□□□□□ -0.93
CUX1-217ENST00000558836 DRAM2Q6UX65 266 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 OR2W3Q7Z3T1 314 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms