RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 ZNF829Q3KNS6 432 aaPredicted RBP4.45□□□□□ -1.7
LDLR-209ENST00000558528 DCAF12L2Q5VW00 463 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 ZNF704Q6ZNC4 412 aaPredicted RBP4.45□□□□□ -1.7
LDLR-209ENST00000558528 FOXL2NBQ6ZUU3 175 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 USP43Q70EL4 1123 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 SSX8Q7RTT4 187 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 PEG10Q86TG7 708 aaKnown RBP4.45□□□□□ -1.7
LDLR-209ENST00000558528 CDC20BQ86Y33 519 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 CROCCP3Q8IVE0 287 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 ZNF100Q8IYN0 542 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 ZNF679Q8IYX0 411 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 RBMXL3Q8N7X1 1067 aaKnown RBP4.45□□□□□ -1.7
LDLR-209ENST00000558528 BOLLQ8N9W6 283 aaKnown RBP4.45□□□□□ -1.7
LDLR-209ENST00000558528 SYT14Q8NB59 555 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 BBS1Q8NFJ9 593 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 SLC26A10Q8NG04 563 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 RNF128Q8TEB7 428 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 SPRYD4Q8WW59 207 aaPredicted RBP4.45□□□□□ -1.7
LDLR-209ENST00000558528 APH1AQ96BI3 265 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 ISOC1Q96CN7 298 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 YIPF6Q96EC8 236 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 TXNDC15Q96J42 360 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 C4orf36Q96KX1 117 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 OR2M2Q96R28 347 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 DOK1Q99704 481 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 SH3GL3Q99963 347 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 ATG101Q9BSB4 218 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 EMC6Q9BV81 110 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 FUNDC2Q9BWH2 189 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 RBM24Q9BX46 236 aaKnown RBP4.45□□□□□ -1.7
LDLR-209ENST00000558528 SRXN1Q9BYN0 137 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 COMMD4Q9H0A8 199 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 PPP1R3EQ9H7J1 279 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 MOB1AQ9H8S9 216 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 MED20Q9H944 212 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 PNRC2Q9NPJ4 139 aaKnown RBP4.45□□□□□ -1.7
LDLR-209ENST00000558528 CENPMQ9NSP4 180 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 ENPP5Q9UJA9 477 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 IKZF2Q9UKS7 526 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 FBXL3Q9UKT7 428 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 STUB1Q9UNE7 303 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 POLR1DQ9Y2S0 133 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 STAB1Q9NY15 2570 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 A0A1B0GTH9 108 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 TRDV1A0A1B0GX56 115 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 A0A1W2PPW3 197 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 C5orf51A6NDU8 294 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 TMEM212A6NML5 194 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 LINC00473A8K010 186 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 ZNF878C9JN71 531 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 ZNF587BE7ETH6 402 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 F8WDY8 70 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 RHODO00212 210 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 HSPB6O14558 160 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 SS18L1O75177 396 aaPredicted RBP4.44□□□□□ -1.7
LDLR-209ENST00000558528 ARL6IP5O75915 188 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 JTBO76095 146 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 RGS11O94810 467 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 GABARAPO95166 117 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 DIRAS3O95661 229 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 RAF1P04049 648 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 MRPL3P09001 348 aaKnown RBP4.44□□□□□ -1.7
LDLR-209ENST00000558528 CST2P09228 141 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 H2BFMP0C1H6 154 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 OR8G3PP0DMU2 310 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 CTLA4P16410 223 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 CELP19835 753 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 CFL1P23528 166 aaKnown RBP4.44□□□□□ -1.7
LDLR-209ENST00000558528 EDNRAP25101 427 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 FGF9P31371 208 aaPredicted RBP4.44□□□□□ -1.7
LDLR-209ENST00000558528 TIMP3P35625 211 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 ARR3P36575 388 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 RFC3P40938 356 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 NAA10P41227 235 aaPredicted RBP4.44□□□□□ -1.7
LDLR-209ENST00000558528 ZNF85Q03923 595 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 RUNX1T1Q06455 604 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 AQP6Q13520 282 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 EIF2B1Q14232 305 aaKnown RBP4.44□□□□□ -1.7
LDLR-209ENST00000558528 IGFBP7Q16270 282 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 SGCAQ16586 387 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 SLC36A2Q495M3 483 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 YIF1BQ5BJH7 314 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 SPATA46Q5T0L3 261 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 FAM27BQ5VT28 67 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 TMEM244Q5VVB8 128 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 CARD17Q5XLA6 110 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 NSUN5P2Q63ZY6 315 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 DPY19L4Q7Z388 723 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 NRARPQ7Z6K4 114 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 TPRA1Q86W33 373 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 PHC2Q8IXK0 858 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 TMEM123Q8N131 208 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 YIPF7Q8N8F6 280 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 ZIC4Q8N9L1 334 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 CSNK2A3Q8NEV1 391 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 OR51L1Q8NGJ5 315 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 OR6K3Q8NGY3 331 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 OR52N5Q8NH56 324 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 FNDC9Q8TBE3 224 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 C11orf40Q8WZ69 217 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms