RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 ANAPC10Q9UM13 185 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 TMEM218A2RU14 115 aa11.28□□□□□ -0.6
LDLR-207ENST00000558013 FAM221AA4D161 298 aa11.28□□□□□ -0.6
LDLR-207ENST00000558013 TNFSF11O14788 317 aa11.28□□□□□ -0.6
LDLR-207ENST00000558013 TBPP20226 339 aa11.28□□□□□ -0.6
LDLR-207ENST00000558013 ID4P47928 161 aa11.28□□□□□ -0.6
LDLR-207ENST00000558013 CXCL12P48061 93 aa11.28□□□□□ -0.6
LDLR-207ENST00000558013 HGFACQ04756 655 aa11.28□□□□□ -0.6
LDLR-207ENST00000558013 AIMP2Q13155 320 aaKnown RBP11.28□□□□□ -0.6
LDLR-207ENST00000558013 PDSS1Q5T2R2 415 aa11.28□□□□□ -0.6
LDLR-207ENST00000558013 OR2A2Q6IF42 318 aa11.28□□□□□ -0.6
LDLR-207ENST00000558013 MRPL14Q6P1L8 145 aaKnown RBP11.28□□□□□ -0.6
LDLR-207ENST00000558013 LHFPL1Q86WI0 220 aa11.28□□□□□ -0.6
LDLR-207ENST00000558013 ARRDC1Q8N5I2 433 aa11.28□□□□□ -0.6
LDLR-207ENST00000558013 PHYHIPLQ96FC7 376 aa11.28□□□□□ -0.6
LDLR-207ENST00000558013 TSNAXQ99598 290 aaKnown RBP11.28□□□□□ -0.6
LDLR-207ENST00000558013 URM1Q9BTM9 101 aaKnown RBP11.28□□□□□ -0.6
LDLR-207ENST00000558013 NMES1Q9C002 83 aa11.28□□□□□ -0.6
LDLR-207ENST00000558013 TLNRD1Q9H1K6 362 aa11.28□□□□□ -0.6
LDLR-207ENST00000558013 PLEK2Q9NYT0 353 aa11.28□□□□□ -0.6
LDLR-207ENST00000558013 PISDQ9UG56 409 aa11.28□□□□□ -0.6
LDLR-207ENST00000558013 GLS2Q9UI32 602 aa11.28□□□□□ -0.6
LDLR-207ENST00000558013 OSGIN2Q9Y236 505 aa11.28□□□□□ -0.6
LDLR-207ENST00000558013 F8VVB4 439 aa11.28□□□□□ -0.6
LDLR-207ENST00000558013 F8VWA3 439 aa11.28□□□□□ -0.6
LDLR-207ENST00000558013 ZIC3O60481 467 aa11.28□□□□□ -0.6
LDLR-207ENST00000558013 ATG12O94817 140 aa11.28□□□□□ -0.6
LDLR-207ENST00000558013 FAM157CP0CG43 387 aa11.28□□□□□ -0.6
LDLR-207ENST00000558013 MSR1P21757 451 aa11.28□□□□□ -0.6
LDLR-207ENST00000558013 OPRM1P35372 400 aa11.28□□□□□ -0.6
LDLR-207ENST00000558013 FAM122CQ6P4D5 195 aa11.28□□□□□ -0.6
LDLR-207ENST00000558013 FAM89BQ8N5H3 189 aa11.28□□□□□ -0.6
LDLR-207ENST00000558013 PARP12Q9H0J9 701 aaKnown RBP11.28□□□□□ -0.6
LDLR-207ENST00000558013 HRH4Q9H3N8 390 aa11.28□□□□□ -0.6
LDLR-207ENST00000558013 TRBV6-7A0A0A0MS04 114 aa11.27□□□□□ -0.6
LDLR-207ENST00000558013 FOXI3A8MTJ6 420 aaPredicted RBP11.27□□□□□ -0.6
LDLR-207ENST00000558013 AGPAT2O15120 278 aa11.27□□□□□ -0.6
LDLR-207ENST00000558013 SCGNO76038 276 aa11.27□□□□□ -0.6
LDLR-207ENST00000558013 UMODP07911 640 aa11.27□□□□□ -0.6
LDLR-207ENST00000558013 PTGER4P35408 488 aa11.27□□□□□ -0.6
LDLR-207ENST00000558013 STARD6P59095 220 aa11.27□□□□□ -0.6
LDLR-207ENST00000558013 SPEM2Q0P670 501 aa11.27□□□□□ -0.6
LDLR-207ENST00000558013 ECH1Q13011 328 aa11.27□□□□□ -0.6
LDLR-207ENST00000558013 TAF9Q16594 264 aa11.27□□□□□ -0.6
LDLR-207ENST00000558013 PEG10Q86TG7 708 aaKnown RBP11.27□□□□□ -0.6
LDLR-207ENST00000558013 CDC6Q99741 560 aa11.27□□□□□ -0.6
LDLR-207ENST00000558013 FAAP24Q9BTP7 215 aa11.27□□□□□ -0.6
LDLR-207ENST00000558013 PIGMQ9H3S5 423 aa11.27□□□□□ -0.6
LDLR-207ENST00000558013 HDGFL3Q9Y3E1 203 aa11.27□□□□□ -0.6
LDLR-207ENST00000558013 A0A0G2JMM0 328 aa11.27□□□□□ -0.61
LDLR-207ENST00000558013 A0A1W2PPB8 328 aa11.27□□□□□ -0.61
LDLR-207ENST00000558013 A0A1W2PRS3 328 aa11.27□□□□□ -0.61
LDLR-207ENST00000558013 KIR3DP1A8MWS1 328 aa11.27□□□□□ -0.61
LDLR-207ENST00000558013 F10P00742 488 aa11.27□□□□□ -0.61
LDLR-207ENST00000558013 TPT1P13693 172 aaKnown RBP11.27□□□□□ -0.61
LDLR-207ENST00000558013 GUCA1AP43080 201 aaPredicted RBP11.27□□□□□ -0.61
LDLR-207ENST00000558013 TAS2R31P59538 309 aa11.27□□□□□ -0.61
LDLR-207ENST00000558013 SLC35A1P78382 337 aa11.27□□□□□ -0.61
LDLR-207ENST00000558013 KCNMB1Q16558 191 aa11.27□□□□□ -0.61
LDLR-207ENST00000558013 HLA-BQ31612 363 aa11.27□□□□□ -0.61
LDLR-207ENST00000558013 SP6Q3SY56 376 aa11.27□□□□□ -0.61
LDLR-207ENST00000558013 CHRFAM7AQ494W8 412 aa11.27□□□□□ -0.61
LDLR-207ENST00000558013 RPL7L1Q6DKI1 246 aaKnown RBP11.27□□□□□ -0.61
LDLR-207ENST00000558013 LDLRAD3Q86YD5 345 aa11.27□□□□□ -0.61
LDLR-207ENST00000558013 ZIC4Q8N9L1 334 aa11.27□□□□□ -0.61
LDLR-207ENST00000558013 ADPRHL1Q8NDY3 354 aa11.27□□□□□ -0.61
LDLR-207ENST00000558013 SAP25Q8TEE9 199 aa11.27□□□□□ -0.61
LDLR-207ENST00000558013 PIGQQ9BRB3 760 aa11.27□□□□□ -0.61
LDLR-207ENST00000558013 SRXN1Q9BYN0 137 aa11.27□□□□□ -0.61
LDLR-207ENST00000558013 SLC26A1Q9H2B4 701 aa11.27□□□□□ -0.61
LDLR-207ENST00000558013 NELFAQ9H3P2 528 aa11.27□□□□□ -0.61
LDLR-207ENST00000558013 PTRH2Q9Y3E5 179 aaKnown RBP11.27□□□□□ -0.61
LDLR-207ENST00000558013 A0A0J9YW62 118 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 FAM230AA0A1W2PPH8 454 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 M0R135 149 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 TOX3O15405 576 aaPredicted RBP11.26□□□□□ -0.61
LDLR-207ENST00000558013 FGF16O43320 207 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 DHRS3O75911 302 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 NAT2P11245 290 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 FPR2P25090 351 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 GRB2P62993 217 aaKnown RBP11.26□□□□□ -0.61
LDLR-207ENST00000558013 MST1LQ2TV78 715 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 PLXDC2Q6UX71 529 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 SGK3Q96BR1 496 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 ZNF799Q96GE5 643 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 NUDT16L1Q9BRJ7 211 aaKnown RBP11.26□□□□□ -0.61
LDLR-207ENST00000558013 SMIM3Q9BZL3 60 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 GPR179Q6PRD1 2367 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 IGKV1-27A0A075B6S5 117 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 CEACAM18A8MTB9 384 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 ZNF705EA8MWA4 302 aaPredicted RBP11.26□□□□□ -0.61
LDLR-207ENST00000558013 NPIPA2E9PIF3 369 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 NPIPA3F8WFD2 350 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 TMEM225BP0DP42 221 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 TSPO2Q5TGU0 170 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 SLC30A7Q8NEW0 376 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 GJC3Q8NFK1 279 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 SEMA6DQ8NFY4 1073 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 ZNF2Q9BSG1 426 aaPredicted RBP11.26□□□□□ -0.61
LDLR-207ENST00000558013 PLA2G2EQ9NZK7 142 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms