RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 GPR37O15354 613 aa10.87□□□□□ -0.67
LDLR-205ENST00000557933 YIF1AO95070 293 aa10.87□□□□□ -0.67
LDLR-205ENST00000557933 CSTBP04080 98 aaKnown RBP10.87□□□□□ -0.67
LDLR-205ENST00000557933 FOLR1P15328 257 aa10.87□□□□□ -0.67
LDLR-205ENST00000557933 NME1P15531 152 aaKnown RBP10.87□□□□□ -0.67
LDLR-205ENST00000557933 ZNF708P17019 499 aa10.87□□□□□ -0.67
LDLR-205ENST00000557933 RPL12P30050 165 aaKnown RBP10.87□□□□□ -0.67
LDLR-205ENST00000557933 RAB5BP61020 215 aa10.87□□□□□ -0.67
LDLR-205ENST00000557933 ACER2Q5QJU3 275 aa10.87□□□□□ -0.67
LDLR-205ENST00000557933 FAM71E2Q8N5Q1 922 aa10.87□□□□□ -0.67
LDLR-205ENST00000557933 ADAMTS17Q8TE56 1095 aa10.87□□□□□ -0.67
LDLR-205ENST00000557933 GUCD1Q96NT3 240 aa10.87□□□□□ -0.67
LDLR-205ENST00000557933 VN1R1Q9GZP7 353 aa10.87□□□□□ -0.67
LDLR-205ENST00000557933 TMEM100Q9NV29 134 aa10.87□□□□□ -0.67
LDLR-205ENST00000557933 COPS7AQ9UBW8 275 aa10.87□□□□□ -0.67
LDLR-205ENST00000557933 LHFPL6Q9Y693 200 aa10.87□□□□□ -0.67
LDLR-205ENST00000557933 ARPC4-TTLL3A0A0A6YYG9 625 aa10.87□□□□□ -0.67
LDLR-205ENST00000557933 ZNF727A8MUV8 499 aa10.87□□□□□ -0.67
LDLR-205ENST00000557933 C1orf196B1AJZ1 125 aa10.87□□□□□ -0.67
LDLR-205ENST00000557933 ALG1L2C9J202 215 aa10.87□□□□□ -0.67
LDLR-205ENST00000557933 EFNA2O43921 213 aa10.87□□□□□ -0.67
LDLR-205ENST00000557933 NPIPB7O75200 414 aa10.87□□□□□ -0.67
LDLR-205ENST00000557933 HKR1P10072 659 aa10.87□□□□□ -0.67
LDLR-205ENST00000557933 ZNF17P17021 662 aa10.87□□□□□ -0.67
LDLR-205ENST00000557933 PRAMEF20Q5VT98 475 aa10.87□□□□□ -0.67
LDLR-205ENST00000557933 MISPQ8IVT2 679 aa10.87□□□□□ -0.67
LDLR-205ENST00000557933 C17orf78Q8N4C9 275 aa10.87□□□□□ -0.67
LDLR-205ENST00000557933 ZNF2Q9BSG1 426 aaPredicted RBP10.87□□□□□ -0.67
LDLR-205ENST00000557933 SLC26A1Q9H2B4 701 aa10.87□□□□□ -0.67
LDLR-205ENST00000557933 WNT16Q9UBV4 365 aa10.87□□□□□ -0.67
LDLR-205ENST00000557933 NXT1Q9UKK6 140 aaKnown RBP10.87□□□□□ -0.67
LDLR-205ENST00000557933 C7orf77A4D0Y5 90 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 SHISA7A6NL88 538 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 TSPAN15O95858 294 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 FBP1P09467 338 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 CHRFAM7AQ494W8 412 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 GRINAQ7Z429 371 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 NKAIN3Q8N8D7 197 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 OR1L3Q8NH93 324 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 RNF133Q8WVZ7 376 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 SLC39A7Q92504 469 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 KLHDC7BQ96G42 594 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 TCTN2Q96GX1 697 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 ABHD14AQ9BUJ0 271 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.86□□□□□ -0.678e-6■■■■□ 26.5
LDLR-205ENST00000557933 KLRF1Q9NZS2 232 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 MCTS1Q9ULC4 181 aaKnown RBP10.86□□□□□ -0.67
LDLR-205ENST00000557933 LOC390937A0A1W2PQ73 354 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 FTCDNL1E5RQL4 147 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 C3orf80F5H4A9 247 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 SPRY1O43609 319 aaPredicted RBP10.86□□□□□ -0.67
LDLR-205ENST00000557933 TSPAN2O60636 221 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 SNAPC5O75971 98 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 HPNP05981 417 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 S100A9P06702 114 aaKnown RBP10.86□□□□□ -0.67
LDLR-205ENST00000557933 RABIFP47224 123 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 HNF4GQ14541 408 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 FAM180AQ6UWF9 173 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 GKN2Q86XP6 184 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 OR2AE1Q8NHA4 323 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 C1orf147Q96MC9 270 aaPredicted RBP10.86□□□□□ -0.67
LDLR-205ENST00000557933 OR5B2Q96R09 309 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 KCNK17Q96T54 332 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 RARRES2Q99969 163 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 WDR77Q9BQA1 342 aaPredicted RBP10.86□□□□□ -0.67
LDLR-205ENST00000557933 NMES1Q9C002 83 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 LIME1Q9H400 295 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 PARPBPQ9NWS1 579 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 ARHGAP21Q5T5U3 1957 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 BOD1L1Q8NFC6 3051 aa10.86□□□□□ -0.67
LDLR-205ENST00000557933 TMEM14DPA8MWL7 114 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 CDRT15L2A8MXV6 281 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 MASP2O00187 686 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 PTAFRP25105 342 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 PPP1CCP36873 323 aaKnown RBP10.85□□□□□ -0.67
LDLR-205ENST00000557933 PLA2G5P39877 138 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 SLC6A8P48029 635 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 CLRN1P58418 232 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 NHLH2Q02577 135 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 HGFACQ04756 655 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 SRSF4Q08170 494 aaKnown RBP10.85□□□□□ -0.67
LDLR-205ENST00000557933 TAF9Q16594 264 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 H1FNTQ75WM6 255 aaPredicted RBP10.85□□□□□ -0.67
LDLR-205ENST00000557933 OR5L1Q8NGL2 311 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 SERINC1Q9NRX5 453 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 CACNA1EQ15878 2313 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 BPNT1O95861 308 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 IGLV3-19P01714 112 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 FCGR3AP08637 254 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 ACKR3P25106 362 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 RBMXP38159 391 aaKnown RBP10.85□□□□□ -0.67
LDLR-205ENST00000557933 CX3CR1P49238 355 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 MYPOPQ86VE0 399 aaPredicted RBP10.85□□□□□ -0.67
LDLR-205ENST00000557933 OR11L1Q8NGX0 322 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 RGCCQ9H4X1 137 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 CACFD1Q9UGQ2 172 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 KIAA2026Q5HYC2 2103 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 H3BMH7 237 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 MT-ATP6P00846 226 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 PATE4P0C8F1 98 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms