RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 H2AFB2P0C5Z0 115 aa12.72□□□□□ -0.37
VPS33B-205ENST00000556096 AKAIN1P0CW23 69 aa12.72□□□□□ -0.37
VPS33B-205ENST00000556096 PTGER4P35408 488 aa12.72□□□□□ -0.37
VPS33B-205ENST00000556096 RBP2P50120 134 aa12.72□□□□□ -0.37
VPS33B-205ENST00000556096 FUT6P51993 359 aa12.72□□□□□ -0.37
VPS33B-205ENST00000556096 ZP1P60852 638 aa12.72□□□□□ -0.37
VPS33B-205ENST00000556096 RPS27AP62979 156 aaKnown RBP12.72□□□□□ -0.37
VPS33B-205ENST00000556096 GABRA6Q16445 453 aa12.72□□□□□ -0.37
VPS33B-205ENST00000556096 SFRP4Q6FHJ7 346 aaPredicted RBP12.72□□□□□ -0.37
VPS33B-205ENST00000556096 Q6ZTK2 550 aa12.72□□□□□ -0.37
VPS33B-205ENST00000556096 C1QL2Q7Z5L3 287 aa12.72□□□□□ -0.37
VPS33B-205ENST00000556096 CNEP1R1Q8N9A8 125 aa12.72□□□□□ -0.37
VPS33B-205ENST00000556096 CHST4Q8NCG5 386 aa12.72□□□□□ -0.37
VPS33B-205ENST00000556096 OR56B1Q8NGI3 324 aa12.72□□□□□ -0.37
VPS33B-205ENST00000556096 RNF170Q96K19 258 aa12.72□□□□□ -0.37
VPS33B-205ENST00000556096 SLC7A11Q9UPY5 501 aa12.72□□□□□ -0.37
VPS33B-205ENST00000556096 TRAV6A0A075B6T7 132 aa12.71□□□□□ -0.37
VPS33B-205ENST00000556096 A0A0A6YYD4 124 aa12.71□□□□□ -0.37
VPS33B-205ENST00000556096 C7orf66A4D0T2 115 aa12.71□□□□□ -0.37
VPS33B-205ENST00000556096 TMEM235A6NFC5 223 aa12.71□□□□□ -0.37
VPS33B-205ENST00000556096 J3QW42 95 aa12.71□□□□□ -0.37
VPS33B-205ENST00000556096 WDR1O75083 606 aa12.71□□□□□ -0.37
VPS33B-205ENST00000556096 CRHP06850 196 aa12.71□□□□□ -0.37
VPS33B-205ENST00000556096 GSTP1P09211 210 aaKnown RBP12.71□□□□□ -0.37
VPS33B-205ENST00000556096 CCL2P13500 99 aa12.71□□□□□ -0.37
VPS33B-205ENST00000556096 GTF2F2P13984 249 aa12.71□□□□□ -0.37
VPS33B-205ENST00000556096 COX5AP20674 150 aa12.71□□□□□ -0.37
VPS33B-205ENST00000556096 TAS2R19P59542 299 aa12.71□□□□□ -0.37
VPS33B-205ENST00000556096 GK2Q14410 553 aaPredicted RBP12.71□□□□□ -0.37
VPS33B-205ENST00000556096 SLC22A6Q4U2R8 563 aa12.71□□□□□ -0.37
VPS33B-205ENST00000556096 DMRTC1Q5HYR2 192 aa12.71□□□□□ -0.37
VPS33B-205ENST00000556096 VWA1Q6PCB0 445 aa12.71□□□□□ -0.37
VPS33B-205ENST00000556096 ASCL4Q6XD76 172 aa12.71□□□□□ -0.37
VPS33B-205ENST00000556096 C1orf162Q8NEQ5 155 aaPredicted RBP12.71□□□□□ -0.37
VPS33B-205ENST00000556096 STEAP2Q8NFT2 490 aa12.71□□□□□ -0.37
VPS33B-205ENST00000556096 BORCS8Q96FH0 119 aa12.71□□□□□ -0.37
VPS33B-205ENST00000556096 TM2D1Q9BX74 207 aa12.71□□□□□ -0.37
VPS33B-205ENST00000556096 BANF2Q9H503 90 aa12.71□□□□□ -0.37
VPS33B-205ENST00000556096 ZMAT3Q9HA38 289 aaKnown RBP12.71□□□□□ -0.37
VPS33B-205ENST00000556096 TUBD1Q9UJT1 453 aa12.71□□□□□ -0.37
VPS33B-205ENST00000556096 STARD10Q9Y365 291 aa12.71□□□□□ -0.37
VPS33B-205ENST00000556096 RCVRNP35243 200 aa12.71□□□□□ -0.38
VPS33B-205ENST00000556096 EIF2B2P49770 351 aaKnown RBP12.71□□□□□ -0.38
VPS33B-205ENST00000556096 ATP1B3P54709 279 aa12.71□□□□□ -0.38
VPS33B-205ENST00000556096 RAB25P57735 213 aa12.71□□□□□ -0.38
VPS33B-205ENST00000556096 UBE2NP61088 152 aaKnown RBP12.71□□□□□ -0.38
VPS33B-205ENST00000556096 EIF2S3LQ2VIR3 472 aaKnown RBP12.71□□□□□ -0.38
VPS33B-205ENST00000556096 STEAP1BQ6NZ63 245 aa12.71□□□□□ -0.38
VPS33B-205ENST00000556096 MOB3CQ70IA8 216 aa12.71□□□□□ -0.38
VPS33B-205ENST00000556096 MRPL21Q7Z2W9 205 aaKnown RBP12.71□□□□□ -0.38
VPS33B-205ENST00000556096 GABRG1Q8N1C3 465 aa12.71□□□□□ -0.38
VPS33B-205ENST00000556096 CSNK2A3Q8NEV1 391 aa12.71□□□□□ -0.38
VPS33B-205ENST00000556096 SLC30A7Q8NEW0 376 aa12.71□□□□□ -0.38
VPS33B-205ENST00000556096 OR5D18Q8NGL1 313 aa12.71□□□□□ -0.38
VPS33B-205ENST00000556096 OR4C16Q8NGL9 310 aa12.71□□□□□ -0.38
VPS33B-205ENST00000556096 PIGCQ92535 297 aa12.71□□□□□ -0.38
VPS33B-205ENST00000556096 CMBLQ96DG6 245 aa12.71□□□□□ -0.38
VPS33B-205ENST00000556096 ST6GAL2Q96JF0 529 aa12.71□□□□□ -0.38
VPS33B-205ENST00000556096 NICN1Q9BSH3 213 aa12.71□□□□□ -0.38
VPS33B-205ENST00000556096 SELENOIQ9C0D9 397 aa12.71□□□□□ -0.38
VPS33B-205ENST00000556096 METTL9Q9H1A3 318 aa12.71□□□□□ -0.38
VPS33B-205ENST00000556096 C20orf85Q9H1P6 137 aa12.71□□□□□ -0.38
VPS33B-205ENST00000556096 MCUBQ9NWR8 336 aa12.71□□□□□ -0.38
VPS33B-205ENST00000556096 ELF5Q9UKW6 265 aaPredicted RBP12.71□□□□□ -0.38
VPS33B-205ENST00000556096 TLN1Q9Y490 2541 aaKnown RBP12.7□□□□□ -0.38
VPS33B-205ENST00000556096 IGKV1-27A0A075B6S5 117 aa12.7□□□□□ -0.38
VPS33B-205ENST00000556096 A0A1W2PP11 408 aa12.7□□□□□ -0.38
VPS33B-205ENST00000556096 FAM230AA0A1W2PPH8 454 aa12.7□□□□□ -0.38
VPS33B-205ENST00000556096 MEIS3P1A6NDR6 274 aa12.7□□□□□ -0.38
VPS33B-205ENST00000556096 ATXN7O15265 892 aaPredicted RBP12.7□□□□□ -0.38
VPS33B-205ENST00000556096 TNFSF13O75888 250 aa12.7□□□□□ -0.38
VPS33B-205ENST00000556096 NDUFB6O95139 128 aa12.7□□□□□ -0.38
VPS33B-205ENST00000556096 CST4P01036 141 aa12.7□□□□□ -0.38
VPS33B-205ENST00000556096 NGFP01138 241 aa12.7□□□□□ -0.38
VPS33B-205ENST00000556096 CGAP01215 116 aa12.7□□□□□ -0.38
VPS33B-205ENST00000556096 MGMTP16455 207 aa12.7□□□□□ -0.38
VPS33B-205ENST00000556096 ZNF14P17017 642 aaPredicted RBP12.7□□□□□ -0.38
VPS33B-205ENST00000556096 TMEM50BP56557 158 aa12.7□□□□□ -0.38
VPS33B-205ENST00000556096 PRSS12P56730 875 aa12.7□□□□□ -0.38
VPS33B-205ENST00000556096 RRAS2P62070 204 aaPredicted RBP12.7□□□□□ -0.38
VPS33B-205ENST00000556096 FOXF2Q12947 444 aa12.7□□□□□ -0.38
VPS33B-205ENST00000556096 PNLIPRP3Q17RR3 467 aa12.7□□□□□ -0.38
VPS33B-205ENST00000556096 ZNF324BQ6AW86 544 aaPredicted RBP12.7□□□□□ -0.38
VPS33B-205ENST00000556096 FAM180AQ6UWF9 173 aa12.7□□□□□ -0.38
VPS33B-205ENST00000556096 SEM1Q6ZVN7 128 aa12.7□□□□□ -0.38
VPS33B-205ENST00000556096 FJX1Q86VR8 437 aa12.7□□□□□ -0.38
VPS33B-205ENST00000556096 Q8NA96 180 aa12.7□□□□□ -0.38
VPS33B-205ENST00000556096 OR5L1Q8NGL2 311 aa12.7□□□□□ -0.38
VPS33B-205ENST00000556096 RAB3CQ96E17 227 aa12.7□□□□□ -0.38
VPS33B-205ENST00000556096 MS4A3Q96HJ5 214 aa12.7□□□□□ -0.38
VPS33B-205ENST00000556096 GHITMQ9H3K2 345 aa12.7□□□□□ -0.38
VPS33B-205ENST00000556096 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.7□□□□□ -0.38
VPS33B-205ENST00000556096 ZNF221Q9UK13 617 aa12.7□□□□□ -0.38
VPS33B-205ENST00000556096 A0A0A6YYJ9 748 aa12.69□□□□□ -0.38
VPS33B-205ENST00000556096 FOXI3A8MTJ6 420 aaPredicted RBP12.69□□□□□ -0.38
VPS33B-205ENST00000556096 SOCS1O15524 211 aa12.69□□□□□ -0.38
VPS33B-205ENST00000556096 ICMTO60725 284 aa12.69□□□□□ -0.38
VPS33B-205ENST00000556096 PRAF2O60831 178 aa12.69□□□□□ -0.38
VPS33B-205ENST00000556096 ZNF780AO75290 641 aaPredicted RBP12.69□□□□□ -0.38
VPS33B-205ENST00000556096 PEX14O75381 377 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms